Cluster: C89.bin_3_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_06647
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_11 | C89_contig_11_250 | 339574 | 342570 | - | 1.B.14.6.1 |
| CAZyme | C89_contig_11 | C89_contig_11_251 | 342805 | 344679 | - | GH35 |
| CAZyme | C89_contig_11 | C89_contig_11_252 | 345826 | 346686 | - | GH16_3 |
| CAZyme | C89_contig_11 | C89_contig_11_253 | 346717 | 349077 | - | GH20 |
| CAZyme | C89_contig_11 | C89_contig_11_254 | 349334 | 350167 | - | GH16_3 |
| TC | C89_contig_11 | C89_contig_11_255 | 350255 | 351871 | - | 8.A.46.1.4 |
| TC | C89_contig_11 | C89_contig_11_256 | 351886 | 355131 | - | 1.B.14.6.1 |
| pfam | C89_contig_11 | C89_contig_11_257 | 355399 | 356538 | - | Kelch_1 | Kelch_2 | Kelch_KLHDC2_KLHL20_DRC7 | NANM |
| TC | C89_contig_11 | C89_contig_11_258 | 356635 | 357873 | - | 2.A.1.14.14 |
| pfam | C89_contig_11 | C89_contig_11_259 | 357883 | 358563 | - | GlcNAc_2-epim |
| pfam | C89_contig_11 | C89_contig_11_260 | 358682 | 360313 | - | DDE_Tnp_1 | DUF772 | DDE_Tnp_1_6 |
| CAZyme | C89_contig_11 | C89_contig_11_261 | 360496 | 362130 | - | CBM93 | GH33 |
Gene ID: C89_contig_11_250
Type: TC
Location: 339574 - 342570 (-)
Type: TC
Location: 339574 - 342570 (-)
Gene ID: C89_contig_11_251
Type: CAZyme
Location: 342805 - 344679 (-)
Type: CAZyme
Location: 342805 - 344679 (-)
Gene ID: C89_contig_11_252
Type: CAZyme
Location: 345826 - 346686 (-)
Type: CAZyme
Location: 345826 - 346686 (-)
Gene ID: C89_contig_11_253
Type: CAZyme
Location: 346717 - 349077 (-)
Type: CAZyme
Location: 346717 - 349077 (-)
Gene ID: C89_contig_11_254
Type: CAZyme
Location: 349334 - 350167 (-)
Type: CAZyme
Location: 349334 - 350167 (-)
Gene ID: C89_contig_11_255
Type: TC
Location: 350255 - 351871 (-)
Type: TC
Location: 350255 - 351871 (-)
Gene ID: C89_contig_11_256
Type: TC
Location: 351886 - 355131 (-)
Type: TC
Location: 351886 - 355131 (-)
Gene ID: C89_contig_11_257
Type: pfam
Location: 355399 - 356538 (-)
Type: pfam
Location: 355399 - 356538 (-)
Gene ID: C89_contig_11_258
Type: TC
Location: 356635 - 357873 (-)
Type: TC
Location: 356635 - 357873 (-)
Gene ID: C89_contig_11_259
Type: pfam
Location: 357883 - 358563 (-)
Type: pfam
Location: 357883 - 358563 (-)
Gene ID: C89_contig_11_260
Type: pfam
Location: 358682 - 360313 (-)
Type: pfam
Location: 358682 - 360313 (-)
Gene ID: C89_contig_11_261
Type: CAZyme
Location: 360496 - 362130 (-)
Type: CAZyme
Location: 360496 - 362130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_11_254 | vegan > omnivore | 1.08772 | 0.00500 |
| C89_contig_11_255 | vegan > omnivore | 1.25531 | 0.00500 |
| C89_contig_11_256 | vegan > omnivore | 1.19195 | 0.00500 |
| C89_contig_11_261 | vegan > omnivore | 1.02794 | 0.00500 |