Cluster: C89.bin_3_CGC38
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_06658
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_14 | C89_contig_14_1891 | 2260339 | 2262204 | - | 2.A.47.4.8 |
| pfam | C89_contig_14 | C89_contig_14_1892 | 2262264 | 2262860 | - | AhpC-TSA | Redoxin | Thioredoxin_8 |
| TC | C89_contig_14 | C89_contig_14_1893 | 2263226 | 2263813 | - | 9.B.18.1.2 |
| pfam | C89_contig_14 | C89_contig_14_1894 | 2263845 | 2265146 | - | Aminotran_1_2 | DegT_DnrJ_EryC1 | DegT_DnrJ_EryC1 |
| CAZyme | C89_contig_14 | C89_contig_14_1895 | 2265162 | 2265926 | - | GT2 |
| pfam | C89_contig_14 | C89_contig_14_1896 | 2265990 | 2267384 | - | O-ag_pol_Wzy |
| NULL(UNKNOWN) | C89_contig_14 | C89_contig_14_1897 | 2267400 | 2268626 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C89_contig_14 | C89_contig_14_1898 | 2268623 | 2269837 | - | GT4 |
| TC | C89_contig_14 | C89_contig_14_1899 | 2269852 | 2271252 | - | 2.A.66.2.16 |
Gene ID: C89_contig_14_1891
Type: TC
Location: 2260339 - 2262204 (-)
Type: TC
Location: 2260339 - 2262204 (-)
Gene ID: C89_contig_14_1892
Type: pfam
Location: 2262264 - 2262860 (-)
Type: pfam
Location: 2262264 - 2262860 (-)
Gene ID: C89_contig_14_1893
Type: TC
Location: 2263226 - 2263813 (-)
Type: TC
Location: 2263226 - 2263813 (-)
Gene ID: C89_contig_14_1894
Type: pfam
Location: 2263845 - 2265146 (-)
Type: pfam
Location: 2263845 - 2265146 (-)
Gene ID: C89_contig_14_1895
Type: CAZyme
Location: 2265162 - 2265926 (-)
Type: CAZyme
Location: 2265162 - 2265926 (-)
Gene ID: C89_contig_14_1896
Type: pfam
Location: 2265990 - 2267384 (-)
Type: pfam
Location: 2265990 - 2267384 (-)
Gene ID: C89_contig_14_1897
Type:
Location: 2267400 - 2268626 (-)
Type:
Location: 2267400 - 2268626 (-)
Gene ID: C89_contig_14_1898
Type: CAZyme
Location: 2268623 - 2269837 (-)
Type: CAZyme
Location: 2268623 - 2269837 (-)
Gene ID: C89_contig_14_1899
Type: TC
Location: 2269852 - 2271252 (-)
Type: TC
Location: 2269852 - 2271252 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_14_1893 | vegan > omnivore | 4.37209 | 0.00500 |