Cluster: C89.bin_3_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_06659
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C89_contig_14 | C89_contig_14_1759 | 2109796 | 2110968 | + | GT2 |
| TC | C89_contig_14 | C89_contig_14_1760 | 2110974 | 2112281 | - | 3.A.1.125.1 |
| STP | C89_contig_14 | C89_contig_14_1761 | 2112291 | 2113490 | - | Aminotran_1_2 |
| NULL(UNKNOWN) | C89_contig_14 | C89_contig_14_1762 | 2113661 | 2114896 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C89_contig_14 | C89_contig_14_1763 | 2114980 | 2117004 | + | PL8 |
| CAZyme | C89_contig_14 | C89_contig_14_1764 | 2117019 | 2117843 | - | GH16_3 |
| pfam | C89_contig_14 | C89_contig_14_1765 | 2117855 | 2118688 | - | PHP |
| TC | C89_contig_14 | C89_contig_14_1766 | 2118685 | 2120550 | - | 3.A.1.120.6 |
| pfam | C89_contig_14 | C89_contig_14_1767 | 2120576 | 2121406 | - | DUF3805 | DUF3806 |
| pfam | C89_contig_14 | C89_contig_14_1768 | 2121548 | 2121931 | - | Lipocalin_8 |
| TC | C89_contig_14 | C89_contig_14_1769 | 2121928 | 2123403 | - | 1.B.73.2.2 |
Gene ID: C89_contig_14_1759
Type: CAZyme
Location: 2109796 - 2110968 (+)
Type: CAZyme
Location: 2109796 - 2110968 (+)
Gene ID: C89_contig_14_1760
Type: TC
Location: 2110974 - 2112281 (-)
Type: TC
Location: 2110974 - 2112281 (-)
Gene ID: C89_contig_14_1761
Type: STP
Location: 2112291 - 2113490 (-)
Type: STP
Location: 2112291 - 2113490 (-)
Gene ID: C89_contig_14_1762
Type:
Location: 2113661 - 2114896 (+)
Type:
Location: 2113661 - 2114896 (+)
Gene ID: C89_contig_14_1763
Type: CAZyme
Location: 2114980 - 2117004 (+)
Type: CAZyme
Location: 2114980 - 2117004 (+)
Gene ID: C89_contig_14_1764
Type: CAZyme
Location: 2117019 - 2117843 (-)
Type: CAZyme
Location: 2117019 - 2117843 (-)
Gene ID: C89_contig_14_1765
Type: pfam
Location: 2117855 - 2118688 (-)
Type: pfam
Location: 2117855 - 2118688 (-)
Gene ID: C89_contig_14_1766
Type: TC
Location: 2118685 - 2120550 (-)
Type: TC
Location: 2118685 - 2120550 (-)
Gene ID: C89_contig_14_1767
Type: pfam
Location: 2120576 - 2121406 (-)
Type: pfam
Location: 2120576 - 2121406 (-)
Gene ID: C89_contig_14_1768
Type: pfam
Location: 2121548 - 2121931 (-)
Type: pfam
Location: 2121548 - 2121931 (-)
Gene ID: C89_contig_14_1769
Type: TC
Location: 2121928 - 2123403 (-)
Type: TC
Location: 2121928 - 2123403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_14_1759 | vegan > omnivore | 1.79626 | 0.00500 |