Cluster: C89.bin_3_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_00440
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C89_contig_11 | C89_contig_11_132 | 197971 | 200433 | + | GH127 |
| NULL(UNKNOWN) | C89_contig_11 | C89_contig_11_133 | 200378 | 200482 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | C89_contig_11 | C89_contig_11_134 | 200809 | 201798 | + | PfkB |
| TC | C89_contig_11 | C89_contig_11_135 | 201843 | 203528 | + | 9.B.174.1.2 |
| NULL(UNKNOWN) | C89_contig_11 | C89_contig_11_136 | 203703 | 206546 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C89_contig_11 | C89_contig_11_137 | 206724 | 209018 | + | GH3 |
| NULL(UNKNOWN) | C89_contig_11 | C89_contig_11_138 | 209404 | 209574 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C89_contig_11 | C89_contig_11_139 | 209765 | 212761 | + | 1.B.14.6.1 |
| TC | C89_contig_11 | C89_contig_11_140 | 212868 | 214388 | + | 8.A.46.1.3 |
| CAZyme | C89_contig_11 | C89_contig_11_141 | 214622 | 215914 | + | GH144 |
| CAZyme | C89_contig_11 | C89_contig_11_142 | 215936 | 217657 | + | CBM32 | GH43_28 |
Gene ID: C89_contig_11_132
Type: CAZyme
Location: 197971 - 200433 (+)
Type: CAZyme
Location: 197971 - 200433 (+)
Gene ID: C89_contig_11_133
Type:
Location: 200378 - 200482 (-)
Type:
Location: 200378 - 200482 (-)
Gene ID: C89_contig_11_134
Type: STP
Location: 200809 - 201798 (+)
Type: STP
Location: 200809 - 201798 (+)
Gene ID: C89_contig_11_135
Type: TC
Location: 201843 - 203528 (+)
Type: TC
Location: 201843 - 203528 (+)
Gene ID: C89_contig_11_136
Type:
Location: 203703 - 206546 (+)
Type:
Location: 203703 - 206546 (+)
Gene ID: C89_contig_11_137
Type: CAZyme
Location: 206724 - 209018 (+)
Type: CAZyme
Location: 206724 - 209018 (+)
Gene ID: C89_contig_11_138
Type:
Location: 209404 - 209574 (-)
Type:
Location: 209404 - 209574 (-)
Gene ID: C89_contig_11_139
Type: TC
Location: 209765 - 212761 (+)
Type: TC
Location: 209765 - 212761 (+)
Gene ID: C89_contig_11_140
Type: TC
Location: 212868 - 214388 (+)
Type: TC
Location: 212868 - 214388 (+)
Gene ID: C89_contig_11_141
Type: CAZyme
Location: 214622 - 215914 (+)
Type: CAZyme
Location: 214622 - 215914 (+)
Gene ID: C89_contig_11_142
Type: CAZyme
Location: 215936 - 217657 (+)
Type: CAZyme
Location: 215936 - 217657 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_11_141 | vegan > omnivore | 2.05129 | 0.00500 |
| C89_contig_11_142 | vegan > omnivore | 1.93545 | 0.00500 |