Cluster: C89.bin_3_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_06660
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_14 | C89_contig_14_1084 | 1287588 | 1288802 | + | 2.A.1.35.1 |
| pfam | C89_contig_14 | C89_contig_14_1085 | 1288978 | 1289778 | + | Patatin |
| pfam | C89_contig_14 | C89_contig_14_1086 | 1289769 | 1290827 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | GFO_IDH_MocA_C3 |
| CAZyme | C89_contig_14 | C89_contig_14_1087 | 1290838 | 1292535 | + | GH13_38 |
| CAZyme | C89_contig_14 | C89_contig_14_1088 | 1292611 | 1294623 | - | GH13_8 |
Gene ID: C89_contig_14_1084
Type: TC
Location: 1287588 - 1288802 (+)
Type: TC
Location: 1287588 - 1288802 (+)
Gene ID: C89_contig_14_1085
Type: pfam
Location: 1288978 - 1289778 (+)
Type: pfam
Location: 1288978 - 1289778 (+)
Gene ID: C89_contig_14_1086
Type: pfam
Location: 1289769 - 1290827 (+)
Type: pfam
Location: 1289769 - 1290827 (+)
Gene ID: C89_contig_14_1087
Type: CAZyme
Location: 1290838 - 1292535 (+)
Type: CAZyme
Location: 1290838 - 1292535 (+)
Gene ID: C89_contig_14_1088
Type: CAZyme
Location: 1292611 - 1294623 (-)
Type: CAZyme
Location: 1292611 - 1294623 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_14_1087 | vegan > omnivore | 1.44778 | 0.00500 |