Cluster: C89.bin_3_CGC20
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_00667
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C89_contig_14 | C89_contig_14_660 | 812497 | 813648 | + | CE9 |
| pfam | C89_contig_14 | C89_contig_14_661 | 821102 | 821692 | + | vATP-synt_E |
| pfam | C89_contig_14 | C89_contig_14_662 | 821704 | 822543 | + | DUF2764 |
| TC | C89_contig_14 | C89_contig_14_663 | 822580 | 824337 | + | 3.A.2.3.3 |
| TC | C89_contig_14 | C89_contig_14_664 | 824367 | 825686 | + | 3.A.2.3.3 |
| pfam | C89_contig_14 | C89_contig_14_665 | 825699 | 826304 | + | ATP-synt_D |
| TC | C89_contig_14 | C89_contig_14_666 | 826301 | 828118 | + | 3.A.2.2.2 |
| TC | C89_contig_14 | C89_contig_14_667 | 828163 | 828624 | + | 3.A.2.2.2 |
| CAZyme | C89_contig_14 | C89_contig_14_668 | 828854 | 830515 | + | GT3 |
| CAZyme | C89_contig_14 | C89_contig_14_669 | 830549 | 833113 | + | GT35 |
| NULL(UNKNOWN) | C89_contig_14 | C89_contig_14_670 | 833214 | 833864 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C89_contig_14 | C89_contig_14_671 | 833997 | 835100 | - | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369 |
| TC | C89_contig_14 | C89_contig_14_672 | 835244 | 836623 | + | 3.A.1.11.8 |
| TC | C89_contig_14 | C89_contig_14_673 | 836641 | 837438 | + | 3.A.1.11.8 |
| TC | C89_contig_14 | C89_contig_14_674 | 837432 | 838220 | + | 3.A.1.11.8 |
| TC | C89_contig_14 | C89_contig_14_675 | 838389 | 839723 | + | 3.A.1.11.8 |
Gene ID: C89_contig_14_660
Type: CAZyme
Location: 812497 - 813648 (+)
Type: CAZyme
Location: 812497 - 813648 (+)
Gene ID: C89_contig_14_661
Type: pfam
Location: 821102 - 821692 (+)
Type: pfam
Location: 821102 - 821692 (+)
Gene ID: C89_contig_14_662
Type: pfam
Location: 821704 - 822543 (+)
Type: pfam
Location: 821704 - 822543 (+)
Gene ID: C89_contig_14_663
Type: TC
Location: 822580 - 824337 (+)
Type: TC
Location: 822580 - 824337 (+)
Gene ID: C89_contig_14_664
Type: TC
Location: 824367 - 825686 (+)
Type: TC
Location: 824367 - 825686 (+)
Gene ID: C89_contig_14_665
Type: pfam
Location: 825699 - 826304 (+)
Type: pfam
Location: 825699 - 826304 (+)
Gene ID: C89_contig_14_666
Type: TC
Location: 826301 - 828118 (+)
Type: TC
Location: 826301 - 828118 (+)
Gene ID: C89_contig_14_667
Type: TC
Location: 828163 - 828624 (+)
Type: TC
Location: 828163 - 828624 (+)
Gene ID: C89_contig_14_668
Type: CAZyme
Location: 828854 - 830515 (+)
Type: CAZyme
Location: 828854 - 830515 (+)
Gene ID: C89_contig_14_669
Type: CAZyme
Location: 830549 - 833113 (+)
Type: CAZyme
Location: 830549 - 833113 (+)
Gene ID: C89_contig_14_670
Type:
Location: 833214 - 833864 (+)
Type:
Location: 833214 - 833864 (+)
Gene ID: C89_contig_14_671
Type: pfam
Location: 833997 - 835100 (-)
Type: pfam
Location: 833997 - 835100 (-)
Gene ID: C89_contig_14_672
Type: TC
Location: 835244 - 836623 (+)
Type: TC
Location: 835244 - 836623 (+)
Gene ID: C89_contig_14_673
Type: TC
Location: 836641 - 837438 (+)
Type: TC
Location: 836641 - 837438 (+)
Gene ID: C89_contig_14_674
Type: TC
Location: 837432 - 838220 (+)
Type: TC
Location: 837432 - 838220 (+)
Gene ID: C89_contig_14_675
Type: TC
Location: 838389 - 839723 (+)
Type: TC
Location: 838389 - 839723 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_14_673 | vegan > omnivore | 1.02299 | 0.00500 |