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Cluster: C89.bin_3_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C89_contig_14 C89_contig_14_252 335709 336776 - 8.A.1.1.2
TF C89_contig_14 C89_contig_14_253 336789 337229 - MarR
CAZyme C89_contig_14 C89_contig_14_254 337387 339237 - GH13_46
STP C89_contig_14 C89_contig_14_255 339697 340989 - TPR_1
STP C89_contig_14 C89_contig_14_256 341004 342335 - TPR_1
TC C89_contig_14 C89_contig_14_257 342484 343644 - 3.B.1.1.2
TC C89_contig_14 C89_contig_14_258 343647 344078 - 3.B.1.1.2
pfam C89_contig_14 C89_contig_14_259 344104 345018 - LTD | OAD_gamma
TC C89_contig_14 C89_contig_14_260 345039 346592 - 3.B.1.1.2
Gene ID: C89_contig_14_252
Type: TC
Location: 335709 - 336776 (-)
Gene ID: C89_contig_14_253
Type: TF
Location: 336789 - 337229 (-)
Gene ID: C89_contig_14_254
Type: CAZyme
Location: 337387 - 339237 (-)
Gene ID: C89_contig_14_255
Type: STP
Location: 339697 - 340989 (-)
Gene ID: C89_contig_14_256
Type: STP
Location: 341004 - 342335 (-)
Gene ID: C89_contig_14_257
Type: TC
Location: 342484 - 343644 (-)
Gene ID: C89_contig_14_258
Type: TC
Location: 343647 - 344078 (-)
Gene ID: C89_contig_14_259
Type: pfam
Location: 344104 - 345018 (-)
Gene ID: C89_contig_14_260
Type: TC
Location: 345039 - 346592 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C89_contig_14_254 vegan > omnivore 1.03866 0.00500

🧭 Explore Read Mapping of CGC

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