Cluster: C89.bin_3_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_11 | C89_contig_11_57 | 77865 | 81125 | - | 1.B.14.6.1 |
| CAZyme | C89_contig_11 | C89_contig_11_58 | 82206 | 84695 | - | GH95 |
| pfam | C89_contig_11 | C89_contig_11_59 | 85476 | 86603 | - | DUF5009 |
| CAZyme | C89_contig_11 | C89_contig_11_60 | 86616 | 88433 | - | GH110 |
| pfam | C89_contig_11 | C89_contig_11_61 | 88661 | 89140 | - | DUF5018-rel |
| pfam | C89_contig_11 | C89_contig_11_62 | 89183 | 91036 | - | SusD_RagB | SusD-like_3 |
| TC | C89_contig_11 | C89_contig_11_63 | 91066 | 94221 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | C89_contig_11 | C89_contig_11_64 | 94833 | 95114 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C89_contig_11 | C89_contig_11_65 | 95280 | 97280 | - | SusD_RagB | SusD-like_3 |
| TC | C89_contig_11 | C89_contig_11_66 | 97293 | 100571 | - | 1.B.14.6.1 |
Gene ID: C89_contig_11_57
Type: TC
Location: 77865 - 81125 (-)
Type: TC
Location: 77865 - 81125 (-)
Gene ID: C89_contig_11_58
Type: CAZyme
Location: 82206 - 84695 (-)
Type: CAZyme
Location: 82206 - 84695 (-)
Gene ID: C89_contig_11_59
Type: pfam
Location: 85476 - 86603 (-)
Type: pfam
Location: 85476 - 86603 (-)
Gene ID: C89_contig_11_60
Type: CAZyme
Location: 86616 - 88433 (-)
Type: CAZyme
Location: 86616 - 88433 (-)
Gene ID: C89_contig_11_61
Type: pfam
Location: 88661 - 89140 (-)
Type: pfam
Location: 88661 - 89140 (-)
Gene ID: C89_contig_11_62
Type: pfam
Location: 89183 - 91036 (-)
Type: pfam
Location: 89183 - 91036 (-)
Gene ID: C89_contig_11_63
Type: TC
Location: 91066 - 94221 (-)
Type: TC
Location: 91066 - 94221 (-)
Gene ID: C89_contig_11_64
Type:
Location: 94833 - 95114 (-)
Type:
Location: 94833 - 95114 (-)
Gene ID: C89_contig_11_65
Type: pfam
Location: 95280 - 97280 (-)
Type: pfam
Location: 95280 - 97280 (-)
Gene ID: C89_contig_11_66
Type: TC
Location: 97293 - 100571 (-)
Type: TC
Location: 97293 - 100571 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.