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Cluster: C55.bin_4_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C55_contig_2354 C55_contig_2354_49 45871 47832 + 3.A.2.2.2
TC C55_contig_2354 C55_contig_2354_50 47863 48342 + 3.A.2.2.2
NULL(UNKNOWN) C55_contig_2354 C55_contig_2354_51 48412 49002 + NULL(UNKNOWN)
[View Structural Homologs]
TC C55_contig_2354 C55_contig_2354_52 49012 50031 + 3.A.2.2.2
TC C55_contig_2354 C55_contig_2354_53 50012 50332 + 3.A.2.2.2
pfam C55_contig_2354 C55_contig_2354_54 50329 51033 + Acetyltransf_1 | Acetyltransf_3
TC C55_contig_2354 C55_contig_2354_55 51067 52857 + 3.A.2.2.2
TC C55_contig_2354 C55_contig_2354_56 52844 54229 + 3.A.2.2.2
TC C55_contig_2354 C55_contig_2354_57 54233 54856 + 3.A.2.2.2
CAZyme C55_contig_2354 C55_contig_2354_58 55331 56464 + CBM50
TC C55_contig_2354 C55_contig_2354_59 56551 57720 - 2.A.1.17.3
Gene ID: C55_contig_2354_49
Type: TC
Location: 45871 - 47832 (+)
Gene ID: C55_contig_2354_50
Type: TC
Location: 47863 - 48342 (+)
Gene ID: C55_contig_2354_51
Type:
Location: 48412 - 49002 (+)
Gene ID: C55_contig_2354_52
Type: TC
Location: 49012 - 50031 (+)
Gene ID: C55_contig_2354_53
Type: TC
Location: 50012 - 50332 (+)
Gene ID: C55_contig_2354_54
Type: pfam
Location: 50329 - 51033 (+)
Gene ID: C55_contig_2354_55
Type: TC
Location: 51067 - 52857 (+)
Gene ID: C55_contig_2354_56
Type: TC
Location: 52844 - 54229 (+)
Gene ID: C55_contig_2354_57
Type: TC
Location: 54233 - 54856 (+)
Gene ID: C55_contig_2354_58
Type: CAZyme
Location: 55331 - 56464 (+)
Gene ID: C55_contig_2354_59
Type: TC
Location: 56551 - 57720 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C55_contig_2354_50 vegan > omnivore 1.55293 0.00918
C55_contig_2354_54 vegan > omnivore 2.90023 0.00918
C55_contig_2354_54 vegetarian > omnivore 3.18993 0.00341

🧭 Explore Read Mapping of CGC

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