Cluster: C55.bin_4_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_2354 | C55_contig_2354_18 | 15732 | 17519 | + | GH35 |
| TC | C55_contig_2354 | C55_contig_2354_19 | 17516 | 17992 | + | 4.A.6.1.18 |
| TC | C55_contig_2354 | C55_contig_2354_20 | 18019 | 18933 | + | 4.A.6.1.18 |
| TC | C55_contig_2354 | C55_contig_2354_21 | 18920 | 19738 | + | 4.A.6.1.18 |
| TC | C55_contig_2354 | C55_contig_2354_22 | 19750 | 20154 | + | 4.A.6.1.18 |
Gene ID: C55_contig_2354_18
Type: CAZyme
Location: 15732 - 17519 (+)
Type: CAZyme
Location: 15732 - 17519 (+)
Gene ID: C55_contig_2354_19
Type: TC
Location: 17516 - 17992 (+)
Type: TC
Location: 17516 - 17992 (+)
Gene ID: C55_contig_2354_20
Type: TC
Location: 18019 - 18933 (+)
Type: TC
Location: 18019 - 18933 (+)
Gene ID: C55_contig_2354_21
Type: TC
Location: 18920 - 19738 (+)
Type: TC
Location: 18920 - 19738 (+)
Gene ID: C55_contig_2354_22
Type: TC
Location: 19750 - 20154 (+)
Type: TC
Location: 19750 - 20154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_2354_19 | vegan > omnivore | 3.73862 | 0.00918 |
| C55_contig_2354_19 | vegetarian > omnivore | 4.84742 | 0.00341 |