Cluster: C55.bin_4_CGC28
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: C55.bin_4
- CGC Family ID: CGCFAM_05261
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_756 | C55_contig_756_756 | 853663 | 854604 | - | GT113 |
| STP | C55_contig_756 | C55_contig_756_757 | 855307 | 855912 | - | Pyr_redox |
| NULL(UNKNOWN) | C55_contig_756 | C55_contig_756_758 | 855994 | 857151 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C55_contig_756 | C55_contig_756_759 | 857291 | 858709 | - | 2.A.66.2.16 |
| pfam | C55_contig_756 | C55_contig_756_760 | 858716 | 859741 | - | ADH_zinc_N | ADH_N | Glu_dehyd_C |
| pfam | C55_contig_756 | C55_contig_756_761 | 859743 | 860450 | - | IspD | NTP_transf_3 |
| CAZyme | C55_contig_756 | C55_contig_756_762 | 860508 | 861473 | - | GT2 |
| pfam | C55_contig_756 | C55_contig_756_763 | 861473 | 862567 | - | Epimerase_2 |
| CAZyme | C55_contig_756 | C55_contig_756_764 | 862564 | 863649 | - | GT4 |
| CAZyme | C55_contig_756 | C55_contig_756_765 | 863624 | 864319 | - | GT26 |
| pfam | C55_contig_756 | C55_contig_756_766 | 864367 | 865152 | - | LicD |
| TC | C55_contig_756 | C55_contig_756_767 | 865156 | 866532 | - | 9.B.18.1.2 |
| TC | C55_contig_756 | C55_contig_756_768 | 866552 | 867244 | - | 8.A.3.2.2 |
| TC | C55_contig_756 | C55_contig_756_769 | 867257 | 867952 | - | 8.A.3.2.3 |
Gene ID: C55_contig_756_756
Type: CAZyme
Location: 853663 - 854604 (-)
Type: CAZyme
Location: 853663 - 854604 (-)
Gene ID: C55_contig_756_757
Type: STP
Location: 855307 - 855912 (-)
Type: STP
Location: 855307 - 855912 (-)
Gene ID: C55_contig_756_758
Type:
Location: 855994 - 857151 (-)
Type:
Location: 855994 - 857151 (-)
Gene ID: C55_contig_756_759
Type: TC
Location: 857291 - 858709 (-)
Type: TC
Location: 857291 - 858709 (-)
Gene ID: C55_contig_756_760
Type: pfam
Location: 858716 - 859741 (-)
Type: pfam
Location: 858716 - 859741 (-)
Gene ID: C55_contig_756_761
Type: pfam
Location: 859743 - 860450 (-)
Type: pfam
Location: 859743 - 860450 (-)
Gene ID: C55_contig_756_762
Type: CAZyme
Location: 860508 - 861473 (-)
Type: CAZyme
Location: 860508 - 861473 (-)
Gene ID: C55_contig_756_763
Type: pfam
Location: 861473 - 862567 (-)
Type: pfam
Location: 861473 - 862567 (-)
Gene ID: C55_contig_756_764
Type: CAZyme
Location: 862564 - 863649 (-)
Type: CAZyme
Location: 862564 - 863649 (-)
Gene ID: C55_contig_756_765
Type: CAZyme
Location: 863624 - 864319 (-)
Type: CAZyme
Location: 863624 - 864319 (-)
Gene ID: C55_contig_756_766
Type: pfam
Location: 864367 - 865152 (-)
Type: pfam
Location: 864367 - 865152 (-)
Gene ID: C55_contig_756_767
Type: TC
Location: 865156 - 866532 (-)
Type: TC
Location: 865156 - 866532 (-)
Gene ID: C55_contig_756_768
Type: TC
Location: 866552 - 867244 (-)
Type: TC
Location: 866552 - 867244 (-)
Gene ID: C55_contig_756_769
Type: TC
Location: 867257 - 867952 (-)
Type: TC
Location: 867257 - 867952 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.