Cluster: C55.bin_4_CGC14
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: C55.bin_4
- CGC Family ID: CGCFAM_00311
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1410 | C55_contig_1410_325 | 346044 | 347690 | - | 8.A.59.2.1 |
| TC | C55_contig_1410 | C55_contig_1410_326 | 347693 | 348304 | - | 9.B.28.1.12 |
| STP | C55_contig_1410 | C55_contig_1410_327 | 348733 | 350214 | - | SBP_bac_1 |
| TC | C55_contig_1410 | C55_contig_1410_328 | 350294 | 351226 | - | 3.A.1.1.29 |
| TC | C55_contig_1410 | C55_contig_1410_329 | 351240 | 352169 | - | 3.A.1.1.10 |
| CAZyme | C55_contig_1410 | C55_contig_1410_330 | 352397 | 354277 | - | GH20 |
| pfam | C55_contig_1410 | C55_contig_1410_331 | 354271 | 355140 | - | ROK |
| CAZyme | C55_contig_1410 | C55_contig_1410_332 | 355225 | 357870 | - | GH38 |
| CAZyme | C55_contig_1410 | C55_contig_1410_333 | 358111 | 359391 | - | GH125 |
| CAZyme | C55_contig_1410 | C55_contig_1410_334 | 359607 | 361712 | + | GH92 |
| pfam | C55_contig_1410 | C55_contig_1410_335 | 361875 | 362420 | - | DUF6287 |
| TC | C55_contig_1410 | C55_contig_1410_336 | 362560 | 364065 | - | 3.A.1.15.3 |
| TC | C55_contig_1410 | C55_contig_1410_337 | 364068 | 364871 | - | 3.A.1.15.3 |
| TC | C55_contig_1410 | C55_contig_1410_338 | 364864 | 365568 | - | 3.A.1.15.3 |
Gene ID: C55_contig_1410_325
Type: TC
Location: 346044 - 347690 (-)
Type: TC
Location: 346044 - 347690 (-)
Gene ID: C55_contig_1410_326
Type: TC
Location: 347693 - 348304 (-)
Type: TC
Location: 347693 - 348304 (-)
Gene ID: C55_contig_1410_327
Type: STP
Location: 348733 - 350214 (-)
Type: STP
Location: 348733 - 350214 (-)
Gene ID: C55_contig_1410_328
Type: TC
Location: 350294 - 351226 (-)
Type: TC
Location: 350294 - 351226 (-)
Gene ID: C55_contig_1410_329
Type: TC
Location: 351240 - 352169 (-)
Type: TC
Location: 351240 - 352169 (-)
Gene ID: C55_contig_1410_330
Type: CAZyme
Location: 352397 - 354277 (-)
Type: CAZyme
Location: 352397 - 354277 (-)
Gene ID: C55_contig_1410_331
Type: pfam
Location: 354271 - 355140 (-)
Type: pfam
Location: 354271 - 355140 (-)
Gene ID: C55_contig_1410_332
Type: CAZyme
Location: 355225 - 357870 (-)
Type: CAZyme
Location: 355225 - 357870 (-)
Gene ID: C55_contig_1410_333
Type: CAZyme
Location: 358111 - 359391 (-)
Type: CAZyme
Location: 358111 - 359391 (-)
Gene ID: C55_contig_1410_334
Type: CAZyme
Location: 359607 - 361712 (+)
Type: CAZyme
Location: 359607 - 361712 (+)
Gene ID: C55_contig_1410_335
Type: pfam
Location: 361875 - 362420 (-)
Type: pfam
Location: 361875 - 362420 (-)
Gene ID: C55_contig_1410_336
Type: TC
Location: 362560 - 364065 (-)
Type: TC
Location: 362560 - 364065 (-)
Gene ID: C55_contig_1410_337
Type: TC
Location: 364068 - 364871 (-)
Type: TC
Location: 364068 - 364871 (-)
Gene ID: C55_contig_1410_338
Type: TC
Location: 364864 - 365568 (-)
Type: TC
Location: 364864 - 365568 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.