Cluster: C55.bin_4_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.bin_4
- CGC Family ID: CGCFAM_03664
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_1410 | C55_contig_1410_233 | 250725 | 252110 | - | GH1 |
| peptidase | C55_contig_1410 | C55_contig_1410_234 | 252390 | 253085 | - | C26.UPW |
| TC | C55_contig_1410 | C55_contig_1410_235 | 253264 | 254784 | - | 3.A.1.12.8 |
| TC | C55_contig_1410 | C55_contig_1410_236 | 254777 | 255505 | - | 3.A.1.12.8 |
| pfam | C55_contig_1410 | C55_contig_1410_237 | 255498 | 256352 | - | NmrA | NAD_binding_10 |
| TF | C55_contig_1410 | C55_contig_1410_238 | 256371 | 256820 | - | MarR |
| TC | C55_contig_1410 | C55_contig_1410_239 | 257078 | 258061 | + | 3.A.1.23.1 |
| pfam | C55_contig_1410 | C55_contig_1410_240 | 258054 | 258842 | + | CbiQ |
| TC | C55_contig_1410 | C55_contig_1410_241 | 258855 | 259580 | + | 3.A.1.23.1 |
| pfam | C55_contig_1410 | C55_contig_1410_242 | 259678 | 262179 | - | tRNA-synt_1 | tRNA-synt_1 | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | C55_contig_1410 | C55_contig_1410_243 | 262303 | 264279 | - | 3.A.1.5.25 |
Gene ID: C55_contig_1410_233
Type: CAZyme
Location: 250725 - 252110 (-)
Type: CAZyme
Location: 250725 - 252110 (-)
Gene ID: C55_contig_1410_234
Type: peptidase
Location: 252390 - 253085 (-)
Type: peptidase
Location: 252390 - 253085 (-)
Gene ID: C55_contig_1410_235
Type: TC
Location: 253264 - 254784 (-)
Type: TC
Location: 253264 - 254784 (-)
Gene ID: C55_contig_1410_236
Type: TC
Location: 254777 - 255505 (-)
Type: TC
Location: 254777 - 255505 (-)
Gene ID: C55_contig_1410_237
Type: pfam
Location: 255498 - 256352 (-)
Type: pfam
Location: 255498 - 256352 (-)
Gene ID: C55_contig_1410_238
Type: TF
Location: 256371 - 256820 (-)
Type: TF
Location: 256371 - 256820 (-)
Gene ID: C55_contig_1410_239
Type: TC
Location: 257078 - 258061 (+)
Type: TC
Location: 257078 - 258061 (+)
Gene ID: C55_contig_1410_240
Type: pfam
Location: 258054 - 258842 (+)
Type: pfam
Location: 258054 - 258842 (+)
Gene ID: C55_contig_1410_241
Type: TC
Location: 258855 - 259580 (+)
Type: TC
Location: 258855 - 259580 (+)
Gene ID: C55_contig_1410_242
Type: pfam
Location: 259678 - 262179 (-)
Type: pfam
Location: 259678 - 262179 (-)
Gene ID: C55_contig_1410_243
Type: TC
Location: 262303 - 264279 (-)
Type: TC
Location: 262303 - 264279 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.