Cluster: C54.bin_6_CGC99
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00184
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1762 | 2498655 | 2500256 | - | GH32 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1763 | 2500266 | 2501669 | - | DUF4960 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1764 | 2501692 | 2503425 | - | 8.A.46.1.5 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1765 | 2503444 | 2506551 | - | 1.B.14.6.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1766 | 2506842 | 2508644 | + | GH32 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1767 | 2508805 | 2509677 | - | Aldose_epim |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1768 | 2509883 | 2511043 | + | 2.A.1.7.17 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1769 | 2511064 | 2512704 | + | GH32 |
| STP | C54_scaffold_3399 | C54_scaffold_3399_1770 | 2512761 | 2513645 | + | PfkB |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1771 | 2513746 | 2515170 | - | DUF5648 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1772 | 2515523 | 2517712 | + | GH36 |
Gene ID: C54_scaffold_3399_1762
Type: CAZyme
Location: 2498655 - 2500256 (-)
Type: CAZyme
Location: 2498655 - 2500256 (-)
Gene ID: C54_scaffold_3399_1763
Type: pfam
Location: 2500266 - 2501669 (-)
Type: pfam
Location: 2500266 - 2501669 (-)
Gene ID: C54_scaffold_3399_1764
Type: TC
Location: 2501692 - 2503425 (-)
Type: TC
Location: 2501692 - 2503425 (-)
Gene ID: C54_scaffold_3399_1765
Type: TC
Location: 2503444 - 2506551 (-)
Type: TC
Location: 2503444 - 2506551 (-)
Gene ID: C54_scaffold_3399_1766
Type: CAZyme
Location: 2506842 - 2508644 (+)
Type: CAZyme
Location: 2506842 - 2508644 (+)
Gene ID: C54_scaffold_3399_1767
Type: pfam
Location: 2508805 - 2509677 (-)
Type: pfam
Location: 2508805 - 2509677 (-)
Gene ID: C54_scaffold_3399_1768
Type: TC
Location: 2509883 - 2511043 (+)
Type: TC
Location: 2509883 - 2511043 (+)
Gene ID: C54_scaffold_3399_1769
Type: CAZyme
Location: 2511064 - 2512704 (+)
Type: CAZyme
Location: 2511064 - 2512704 (+)
Gene ID: C54_scaffold_3399_1770
Type: STP
Location: 2512761 - 2513645 (+)
Type: STP
Location: 2512761 - 2513645 (+)
Gene ID: C54_scaffold_3399_1771
Type: pfam
Location: 2513746 - 2515170 (-)
Type: pfam
Location: 2513746 - 2515170 (-)
Gene ID: C54_scaffold_3399_1772
Type: CAZyme
Location: 2515523 - 2517712 (+)
Type: CAZyme
Location: 2515523 - 2517712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1762 | vegan > omnivore | 1.24396 | 0.01049 |
| C54_scaffold_3399_1762 | vegetarian > omnivore | 2.04722 | 0.00141 |
| C54_scaffold_3399_1763 | vegan > omnivore | 1.85965 | 0.01049 |
| C54_scaffold_3399_1763 | vegetarian > omnivore | 2.11819 | 0.00141 |
| C54_scaffold_3399_1764 | vegan > omnivore | 1.44050 | 0.01049 |
| C54_scaffold_3399_1764 | vegetarian > omnivore | 1.64810 | 0.00141 |
| C54_scaffold_3399_1767 | vegan > omnivore | 1.71467 | 0.01049 |
| C54_scaffold_3399_1767 | vegetarian > omnivore | 1.85896 | 0.00141 |
| C54_scaffold_3399_1771 | vegan > omnivore | 3.22855 | 0.01049 |
| C54_scaffold_3399_1771 | vegetarian > omnivore | 2.99898 | 0.00141 |