Cluster: C54.bin_6_CGC95
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_04215
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1532 | 2207465 | 2208418 | - | GT2 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1533 | 2208619 | 2208831 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1534 | 2208936 | 2210657 | + | GT83 |
| STP | C54_scaffold_3399 | C54_scaffold_3399_1535 | 2210654 | 2211190 | + | HD |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1536 | 2211417 | 2214047 | + | 1.B.42.1.8 |
Gene ID: C54_scaffold_3399_1532
Type: CAZyme
Location: 2207465 - 2208418 (-)
Type: CAZyme
Location: 2207465 - 2208418 (-)
Gene ID: C54_scaffold_3399_1533
Type:
Location: 2208619 - 2208831 (+)
Type:
Location: 2208619 - 2208831 (+)
Gene ID: C54_scaffold_3399_1534
Type: CAZyme
Location: 2208936 - 2210657 (+)
Type: CAZyme
Location: 2208936 - 2210657 (+)
Gene ID: C54_scaffold_3399_1535
Type: STP
Location: 2210654 - 2211190 (+)
Type: STP
Location: 2210654 - 2211190 (+)
Gene ID: C54_scaffold_3399_1536
Type: TC
Location: 2211417 - 2214047 (+)
Type: TC
Location: 2211417 - 2214047 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1533 | vegan > omnivore | 1.96022 | 0.01049 |
| C54_scaffold_3399_1533 | vegetarian > omnivore | 2.11948 | 0.00141 |