Cluster: C54.bin_6_CGC93
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 6
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01251
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_1488 | 2152058 | 2155396 | + | 1.B.14.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1489 | 2155408 | 2157444 | + | SusD_RagB | SusD-like_3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1490 | 2157555 | 2158934 | + | GH28 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1491 | 2158949 | 2160343 | + | GH43_24 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1492 | 2160395 | 2162479 | + | PL27 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1493 | 2162579 | 2164276 | + | CE12 | CE4 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1494 | 2164319 | 2166646 | + | GH115 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1495 | 2166748 | 2170068 | - | GH35 | GH43_24 |
Gene ID: C54_scaffold_3399_1488
Type: TC
Location: 2152058 - 2155396 (+)
Type: TC
Location: 2152058 - 2155396 (+)
Gene ID: C54_scaffold_3399_1489
Type: pfam
Location: 2155408 - 2157444 (+)
Type: pfam
Location: 2155408 - 2157444 (+)
Gene ID: C54_scaffold_3399_1490
Type: CAZyme
Location: 2157555 - 2158934 (+)
Type: CAZyme
Location: 2157555 - 2158934 (+)
Gene ID: C54_scaffold_3399_1491
Type: CAZyme
Location: 2158949 - 2160343 (+)
Type: CAZyme
Location: 2158949 - 2160343 (+)
Gene ID: C54_scaffold_3399_1492
Type: CAZyme
Location: 2160395 - 2162479 (+)
Type: CAZyme
Location: 2160395 - 2162479 (+)
Gene ID: C54_scaffold_3399_1493
Type: CAZyme
Location: 2162579 - 2164276 (+)
Type: CAZyme
Location: 2162579 - 2164276 (+)
Gene ID: C54_scaffold_3399_1494
Type: CAZyme
Location: 2164319 - 2166646 (+)
Type: CAZyme
Location: 2164319 - 2166646 (+)
Gene ID: C54_scaffold_3399_1495
Type: CAZyme
Location: 2166748 - 2170068 (-)
Type: CAZyme
Location: 2166748 - 2170068 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1492 | vegan > omnivore | 2.48420 | 0.01049 |
| C54_scaffold_3399_1492 | vegetarian > omnivore | 1.55228 | 0.00141 |
| C54_scaffold_3399_1494 | vegan > omnivore | 1.19293 | 0.01049 |
| C54_scaffold_3399_1495 | vegetarian > omnivore | 1.18912 | 0.00141 |