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Cluster: C54.bin_6_CGC92

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C54_scaffold_3399 C54_scaffold_3399_1466 2104632 2106647 - GH154
TF C54_scaffold_3399 C54_scaffold_3399_1467 2107004 2111203 + HTH_AraC
TC C54_scaffold_3399 C54_scaffold_3399_1468 2111427 2114756 + 1.B.14.6.1
pfam C54_scaffold_3399 C54_scaffold_3399_1469 2114773 2116788 + SusD_RagB | SusD-like_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_1470 2116887 2118011 + GH43_24
CAZyme C54_scaffold_3399 C54_scaffold_3399_1471 2118074 2118925 + GH16_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_1472 2119077 2120327 + GH154
CAZyme C54_scaffold_3399 C54_scaffold_3399_1473 2120333 2121622 + PL42
CAZyme C54_scaffold_3399 C54_scaffold_3399_1474 2121872 2122996 + GH105
CAZyme C54_scaffold_3399 C54_scaffold_3399_1475 2123187 2125118 + GH43_19 | GH43_34
CAZyme C54_scaffold_3399 C54_scaffold_3399_1476 2125159 2128086 + GH43_19 | GH97
CAZyme C54_scaffold_3399 C54_scaffold_3399_1477 2128103 2130631 + GH51_2
CAZyme C54_scaffold_3399 C54_scaffold_3399_1478 2130641 2132572 + GH51_2
CAZyme C54_scaffold_3399 C54_scaffold_3399_1479 2132707 2135802 + GH2
CAZyme C54_scaffold_3399 C54_scaffold_3399_1480 2135923 2136921 + GH43_17
TF C54_scaffold_3399 C54_scaffold_3399_1481 2137062 2139806 + HTH_AraC
TC C54_scaffold_3399 C54_scaffold_3399_1482 2140060 2143026 + 1.B.14.6.1
pfam C54_scaffold_3399 C54_scaffold_3399_1483 2143039 2144796 + SusD_RagB | SusD-like_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_1484 2144815 2146431 + GH31_3
Gene ID: C54_scaffold_3399_1466
Type: CAZyme
Location: 2104632 - 2106647 (-)
Gene ID: C54_scaffold_3399_1467
Type: TF
Location: 2107004 - 2111203 (+)
Gene ID: C54_scaffold_3399_1468
Type: TC
Location: 2111427 - 2114756 (+)
Gene ID: C54_scaffold_3399_1469
Type: pfam
Location: 2114773 - 2116788 (+)
Gene ID: C54_scaffold_3399_1470
Type: CAZyme
Location: 2116887 - 2118011 (+)
Gene ID: C54_scaffold_3399_1471
Type: CAZyme
Location: 2118074 - 2118925 (+)
Gene ID: C54_scaffold_3399_1472
Type: CAZyme
Location: 2119077 - 2120327 (+)
Gene ID: C54_scaffold_3399_1473
Type: CAZyme
Location: 2120333 - 2121622 (+)
Gene ID: C54_scaffold_3399_1474
Type: CAZyme
Location: 2121872 - 2122996 (+)
Gene ID: C54_scaffold_3399_1475
Type: CAZyme
Location: 2123187 - 2125118 (+)
Gene ID: C54_scaffold_3399_1476
Type: CAZyme
Location: 2125159 - 2128086 (+)
Gene ID: C54_scaffold_3399_1477
Type: CAZyme
Location: 2128103 - 2130631 (+)
Gene ID: C54_scaffold_3399_1478
Type: CAZyme
Location: 2130641 - 2132572 (+)
Gene ID: C54_scaffold_3399_1479
Type: CAZyme
Location: 2132707 - 2135802 (+)
Gene ID: C54_scaffold_3399_1480
Type: CAZyme
Location: 2135923 - 2136921 (+)
Gene ID: C54_scaffold_3399_1481
Type: TF
Location: 2137062 - 2139806 (+)
Gene ID: C54_scaffold_3399_1482
Type: TC
Location: 2140060 - 2143026 (+)
Gene ID: C54_scaffold_3399_1483
Type: pfam
Location: 2143039 - 2144796 (+)
Gene ID: C54_scaffold_3399_1484
Type: CAZyme
Location: 2144815 - 2146431 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C54_scaffold_3399_1466 vegan > omnivore 2.59384 0.01049
C54_scaffold_3399_1466 vegetarian > omnivore 2.08128 0.00141
C54_scaffold_3399_1471 vegan > omnivore 2.19269 0.01049
C54_scaffold_3399_1471 vegetarian > omnivore 2.68959 0.00141
C54_scaffold_3399_1472 vegan > omnivore 2.19139 0.01049
C54_scaffold_3399_1472 vegetarian > omnivore 2.26814 0.00141
C54_scaffold_3399_1480 vegan > omnivore 2.01677 0.01049
C54_scaffold_3399_1480 vegetarian > omnivore 2.09589 0.00141

🧭 Explore Read Mapping of CGC

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