Cluster: C54.bin_6_CGC88
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02167
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_1168 | 1691782 | 1693488 | + | 3.A.3.7.2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1169 | 1693508 | 1695556 | + | 3.A.3.7.2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1170 | 1695629 | 1696204 | + | 3.A.3.7.2 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1171 | 1696335 | 1697084 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1172 | 1697128 | 1698252 | + | KdpD |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1173 | 1698274 | 1699713 | + | 2.A.21.9.1 |
| peptidase | C54_scaffold_3399 | C54_scaffold_3399_1174 | 1699793 | 1702042 | - | S09.UPB |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1175 | 1702056 | 1704461 | - | GH127 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1176 | 1704484 | 1706886 | - | CBM32 | GH43_34 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1177 | 1706954 | 1709680 | - | GH97 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1178 | 1710174 | 1712612 | + | GH127 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1179 | 1712680 | 1715781 | + | 1.B.14.6.1 |
Gene ID: C54_scaffold_3399_1168
Type: TC
Location: 1691782 - 1693488 (+)
Type: TC
Location: 1691782 - 1693488 (+)
Gene ID: C54_scaffold_3399_1169
Type: TC
Location: 1693508 - 1695556 (+)
Type: TC
Location: 1693508 - 1695556 (+)
Gene ID: C54_scaffold_3399_1170
Type: TC
Location: 1695629 - 1696204 (+)
Type: TC
Location: 1695629 - 1696204 (+)
Gene ID: C54_scaffold_3399_1171
Type:
Location: 1696335 - 1697084 (+)
Type:
Location: 1696335 - 1697084 (+)
Gene ID: C54_scaffold_3399_1172
Type: pfam
Location: 1697128 - 1698252 (+)
Type: pfam
Location: 1697128 - 1698252 (+)
Gene ID: C54_scaffold_3399_1173
Type: TC
Location: 1698274 - 1699713 (+)
Type: TC
Location: 1698274 - 1699713 (+)
Gene ID: C54_scaffold_3399_1174
Type: peptidase
Location: 1699793 - 1702042 (-)
Type: peptidase
Location: 1699793 - 1702042 (-)
Gene ID: C54_scaffold_3399_1175
Type: CAZyme
Location: 1702056 - 1704461 (-)
Type: CAZyme
Location: 1702056 - 1704461 (-)
Gene ID: C54_scaffold_3399_1176
Type: CAZyme
Location: 1704484 - 1706886 (-)
Type: CAZyme
Location: 1704484 - 1706886 (-)
Gene ID: C54_scaffold_3399_1177
Type: CAZyme
Location: 1706954 - 1709680 (-)
Type: CAZyme
Location: 1706954 - 1709680 (-)
Gene ID: C54_scaffold_3399_1178
Type: CAZyme
Location: 1710174 - 1712612 (+)
Type: CAZyme
Location: 1710174 - 1712612 (+)
Gene ID: C54_scaffold_3399_1179
Type: TC
Location: 1712680 - 1715781 (+)
Type: TC
Location: 1712680 - 1715781 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1171 | vegan > omnivore | 1.29708 | 0.01049 |
| C54_scaffold_3399_1171 | vegetarian > omnivore | 1.13905 | 0.00141 |
| C54_scaffold_3399_1176 | vegetarian > omnivore | 1.10359 | 0.00141 |