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Cluster: C54.bin_6_CGC85

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C54_scaffold_3399 C54_scaffold_3399_1118 1611132 1613483 - GH3
CAZyme C54_scaffold_3399 C54_scaffold_3399_1119 1613501 1614538 - GH5_5
CAZyme C54_scaffold_3399 C54_scaffold_3399_1120 1614565 1616259 - PL38
pfam C54_scaffold_3399 C54_scaffold_3399_1121 1616358 1617956 - SusD_RagB | SusD-like_3
TC C54_scaffold_3399 C54_scaffold_3399_1122 1617999 1621142 - 1.B.14.6.1
TF C54_scaffold_3399 C54_scaffold_3399_1123 1621417 1625391 - HTH_AraC
CAZyme C54_scaffold_3399 C54_scaffold_3399_1124 1625601 1627715 + GH92
CAZyme C54_scaffold_3399 C54_scaffold_3399_1125 1627832 1629034 + GH88
Gene ID: C54_scaffold_3399_1118
Type: CAZyme
Location: 1611132 - 1613483 (-)
Gene ID: C54_scaffold_3399_1119
Type: CAZyme
Location: 1613501 - 1614538 (-)
Gene ID: C54_scaffold_3399_1120
Type: CAZyme
Location: 1614565 - 1616259 (-)
Gene ID: C54_scaffold_3399_1121
Type: pfam
Location: 1616358 - 1617956 (-)
Gene ID: C54_scaffold_3399_1122
Type: TC
Location: 1617999 - 1621142 (-)
Gene ID: C54_scaffold_3399_1123
Type: TF
Location: 1621417 - 1625391 (-)
Gene ID: C54_scaffold_3399_1124
Type: CAZyme
Location: 1625601 - 1627715 (+)
Gene ID: C54_scaffold_3399_1125
Type: CAZyme
Location: 1627832 - 1629034 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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