Cluster: C54.bin_6_CGC84
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00298
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1091 | 1561439 | 1563970 | + | CE20 | GH105 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1092 | 1564002 | 1566830 | + | GH106 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1093 | 1566906 | 1568444 | + | GH28 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1094 | 1568575 | 1570032 | + | FGGY_N | FGGY_C |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1095 | 1570098 | 1571351 | + | RhaA |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1096 | 1571450 | 1572481 | + | 2.A.7.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1097 | 1572505 | 1573314 | + | Aldolase_II |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1098 | 1573383 | 1574681 | + | GH105 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_1099 | 1574809 | 1575735 | + | HTH_AraC |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1100 | 1576618 | 1579881 | + | 1.B.14.6.1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1101 | 1579901 | 1582000 | + | 8.A.46.1.3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1102 | 1582207 | 1583685 | + | PL1_2 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1103 | 1583713 | 1585584 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1104 | 1585603 | 1586871 | + | GH43 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1105 | 1587120 | 1589519 | + | 1.B.14.3.1 |
Gene ID: C54_scaffold_3399_1091
Type: CAZyme
Location: 1561439 - 1563970 (+)
Type: CAZyme
Location: 1561439 - 1563970 (+)
Gene ID: C54_scaffold_3399_1092
Type: CAZyme
Location: 1564002 - 1566830 (+)
Type: CAZyme
Location: 1564002 - 1566830 (+)
Gene ID: C54_scaffold_3399_1093
Type: CAZyme
Location: 1566906 - 1568444 (+)
Type: CAZyme
Location: 1566906 - 1568444 (+)
Gene ID: C54_scaffold_3399_1094
Type: pfam
Location: 1568575 - 1570032 (+)
Type: pfam
Location: 1568575 - 1570032 (+)
Gene ID: C54_scaffold_3399_1095
Type: pfam
Location: 1570098 - 1571351 (+)
Type: pfam
Location: 1570098 - 1571351 (+)
Gene ID: C54_scaffold_3399_1096
Type: TC
Location: 1571450 - 1572481 (+)
Type: TC
Location: 1571450 - 1572481 (+)
Gene ID: C54_scaffold_3399_1097
Type: pfam
Location: 1572505 - 1573314 (+)
Type: pfam
Location: 1572505 - 1573314 (+)
Gene ID: C54_scaffold_3399_1098
Type: CAZyme
Location: 1573383 - 1574681 (+)
Type: CAZyme
Location: 1573383 - 1574681 (+)
Gene ID: C54_scaffold_3399_1099
Type: TF
Location: 1574809 - 1575735 (+)
Type: TF
Location: 1574809 - 1575735 (+)
Gene ID: C54_scaffold_3399_1100
Type: TC
Location: 1576618 - 1579881 (+)
Type: TC
Location: 1576618 - 1579881 (+)
Gene ID: C54_scaffold_3399_1101
Type: TC
Location: 1579901 - 1582000 (+)
Type: TC
Location: 1579901 - 1582000 (+)
Gene ID: C54_scaffold_3399_1102
Type: CAZyme
Location: 1582207 - 1583685 (+)
Type: CAZyme
Location: 1582207 - 1583685 (+)
Gene ID: C54_scaffold_3399_1103
Type:
Location: 1583713 - 1585584 (+)
Type:
Location: 1583713 - 1585584 (+)
Gene ID: C54_scaffold_3399_1104
Type: CAZyme
Location: 1585603 - 1586871 (+)
Type: CAZyme
Location: 1585603 - 1586871 (+)
Gene ID: C54_scaffold_3399_1105
Type: TC
Location: 1587120 - 1589519 (+)
Type: TC
Location: 1587120 - 1589519 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1094 | vegetarian > omnivore | 1.18388 | 0.00141 |