Cluster: C54.bin_6_CGC83
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 5
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_05257
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1012 | 1463563 | 1465992 | + | GH95 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1013 | 1466018 | 1467253 | + | GH43_2 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1014 | 1467343 | 1469940 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1015 | 1470154 | 1473018 | + | GH3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1016 | 1473029 | 1475353 | + | GH31_4 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1017 | 1475350 | 1477056 | + | CBM32 | GH43_28 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1018 | 1477488 | 1479188 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1019 | 1479230 | 1482406 | + | 1.B.14.6.1 |
Gene ID: C54_scaffold_3399_1012
Type: CAZyme
Location: 1463563 - 1465992 (+)
Type: CAZyme
Location: 1463563 - 1465992 (+)
Gene ID: C54_scaffold_3399_1013
Type: CAZyme
Location: 1466018 - 1467253 (+)
Type: CAZyme
Location: 1466018 - 1467253 (+)
Gene ID: C54_scaffold_3399_1014
Type:
Location: 1467343 - 1469940 (-)
Type:
Location: 1467343 - 1469940 (-)
Gene ID: C54_scaffold_3399_1015
Type: CAZyme
Location: 1470154 - 1473018 (+)
Type: CAZyme
Location: 1470154 - 1473018 (+)
Gene ID: C54_scaffold_3399_1016
Type: CAZyme
Location: 1473029 - 1475353 (+)
Type: CAZyme
Location: 1473029 - 1475353 (+)
Gene ID: C54_scaffold_3399_1017
Type: CAZyme
Location: 1475350 - 1477056 (+)
Type: CAZyme
Location: 1475350 - 1477056 (+)
Gene ID: C54_scaffold_3399_1018
Type:
Location: 1477488 - 1479188 (+)
Type:
Location: 1477488 - 1479188 (+)
Gene ID: C54_scaffold_3399_1019
Type: TC
Location: 1479230 - 1482406 (+)
Type: TC
Location: 1479230 - 1482406 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1012 | vegetarian > omnivore | 1.78949 | 0.00141 |
| C54_scaffold_3399_1012 | vegetarian > vegan | 1.48342 | 0.00785 |
| C54_scaffold_3399_1013 | vegan > omnivore | 1.13831 | 0.01049 |
| C54_scaffold_3399_1013 | vegetarian > omnivore | 1.68654 | 0.00141 |
| C54_scaffold_3399_1014 | vegetarian > omnivore | 3.89474 | 0.00141 |
| C54_scaffold_3399_1014 | vegetarian > vegan | 3.42683 | 0.00471 |