Cluster: C54.bin_6_CGC79
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: pectin/host glycan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00110
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_876 | 1267573 | 1270785 | + | 1.B.14.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_877 | 1270805 | 1272622 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| sulfatase | C54_scaffold_3399 | C54_scaffold_3399_878 | 1272742 | 1274325 | + | S1_11 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_879 | 1274352 | 1276667 | + | GH20 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_880 | 1276680 | 1279760 | + | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_881 | 1279786 | 1281657 | + | CBM32 | GH29 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_882 | 1281692 | 1284082 | + | GH16_3 |
Gene ID: C54_scaffold_3399_876
Type: TC
Location: 1267573 - 1270785 (+)
Type: TC
Location: 1267573 - 1270785 (+)
Gene ID: C54_scaffold_3399_877
Type: pfam
Location: 1270805 - 1272622 (+)
Type: pfam
Location: 1270805 - 1272622 (+)
Gene ID: C54_scaffold_3399_878
Type: sulfatase
Location: 1272742 - 1274325 (+)
Type: sulfatase
Location: 1272742 - 1274325 (+)
Gene ID: C54_scaffold_3399_879
Type: CAZyme
Location: 1274352 - 1276667 (+)
Type: CAZyme
Location: 1274352 - 1276667 (+)
Gene ID: C54_scaffold_3399_880
Type: CAZyme
Location: 1276680 - 1279760 (+)
Type: CAZyme
Location: 1276680 - 1279760 (+)
Gene ID: C54_scaffold_3399_881
Type: CAZyme
Location: 1279786 - 1281657 (+)
Type: CAZyme
Location: 1279786 - 1281657 (+)
Gene ID: C54_scaffold_3399_882
Type: CAZyme
Location: 1281692 - 1284082 (+)
Type: CAZyme
Location: 1281692 - 1284082 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_877 | vegetarian > omnivore | 1.34622 | 0.00141 |
| C54_scaffold_3399_877 | vegetarian > vegan | 3.19670 | 0.00827 |
| C54_scaffold_3399_879 | vegetarian > vegan | 2.14902 | 0.00471 |
| C54_scaffold_3399_881 | vegetarian > omnivore | 1.39186 | 0.00141 |
| C54_scaffold_3399_881 | vegetarian > vegan | 1.63037 | 0.00827 |
| C54_scaffold_3399_882 | vegetarian > omnivore | 1.25803 | 0.00141 |
| C54_scaffold_3399_882 | vegetarian > vegan | 2.24426 | 0.00471 |