Cluster: C54.bin_6_CGC77
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02624
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_832 | 1204789 | 1205541 | + | 3.A.1.27.4 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_833 | 1205545 | 1206888 | + | SUFBD_core | SufBD_N |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_834 | 1206911 | 1208125 | + | Aminotran_1_2 | Aminotran_5 | DegT_DnrJ_EryC1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_835 | 1208153 | 1209196 | - | 9.A.40.2.4 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_836 | 1209283 | 1209591 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_837 | 1209794 | 1210114 | + | YbjQ_1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_838 | 1210327 | 1212531 | + | 3.A.10.1.10 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_839 | 1212609 | 1214537 | - | GH63 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_840 | 1214720 | 1217872 | - | GH2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_841 | 1217901 | 1218506 | - | 2.A.124.1.2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_842 | 1218503 | 1218781 | - | 2.A.124.1.2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_843 | 1218874 | 1220391 | - | 8.A.46.1.3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_844 | 1220415 | 1223555 | - | 1.B.14.6.1 |
Gene ID: C54_scaffold_3399_832
Type: TC
Location: 1204789 - 1205541 (+)
Type: TC
Location: 1204789 - 1205541 (+)
Gene ID: C54_scaffold_3399_833
Type: pfam
Location: 1205545 - 1206888 (+)
Type: pfam
Location: 1205545 - 1206888 (+)
Gene ID: C54_scaffold_3399_834
Type: pfam
Location: 1206911 - 1208125 (+)
Type: pfam
Location: 1206911 - 1208125 (+)
Gene ID: C54_scaffold_3399_835
Type: TC
Location: 1208153 - 1209196 (-)
Type: TC
Location: 1208153 - 1209196 (-)
Gene ID: C54_scaffold_3399_836
Type:
Location: 1209283 - 1209591 (-)
Type:
Location: 1209283 - 1209591 (-)
Gene ID: C54_scaffold_3399_837
Type: pfam
Location: 1209794 - 1210114 (+)
Type: pfam
Location: 1209794 - 1210114 (+)
Gene ID: C54_scaffold_3399_838
Type: TC
Location: 1210327 - 1212531 (+)
Type: TC
Location: 1210327 - 1212531 (+)
Gene ID: C54_scaffold_3399_839
Type: CAZyme
Location: 1212609 - 1214537 (-)
Type: CAZyme
Location: 1212609 - 1214537 (-)
Gene ID: C54_scaffold_3399_840
Type: CAZyme
Location: 1214720 - 1217872 (-)
Type: CAZyme
Location: 1214720 - 1217872 (-)
Gene ID: C54_scaffold_3399_841
Type: TC
Location: 1217901 - 1218506 (-)
Type: TC
Location: 1217901 - 1218506 (-)
Gene ID: C54_scaffold_3399_842
Type: TC
Location: 1218503 - 1218781 (-)
Type: TC
Location: 1218503 - 1218781 (-)
Gene ID: C54_scaffold_3399_843
Type: TC
Location: 1218874 - 1220391 (-)
Type: TC
Location: 1218874 - 1220391 (-)
Gene ID: C54_scaffold_3399_844
Type: TC
Location: 1220415 - 1223555 (-)
Type: TC
Location: 1220415 - 1223555 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_835 | vegan > omnivore | 2.63365 | 0.01049 |
| C54_scaffold_3399_835 | vegetarian > omnivore | 3.52216 | 0.00141 |
| C54_scaffold_3399_836 | vegan > omnivore | 2.36333 | 0.01049 |
| C54_scaffold_3399_836 | vegetarian > omnivore | 2.93119 | 0.00141 |
| C54_scaffold_3399_843 | vegetarian > vegan | 2.40403 | 0.00471 |
| C54_scaffold_3399_844 | vegetarian > vegan | 2.16930 | 0.00471 |