Cluster: C54.bin_6_CGC76
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00175
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_814 | 1178617 | 1181595 | + | 1.B.14.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_815 | 1181631 | 1183427 | + | SusD_RagB |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_816 | 1183446 | 1185125 | + | CBM26 | CBM26 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_817 | 1185269 | 1186612 | + | GH13 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_818 | 1186614 | 1187939 | + | GH13 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_819 | 1187989 | 1190133 | + | GH97 |
Gene ID: C54_scaffold_3399_814
Type: TC
Location: 1178617 - 1181595 (+)
Type: TC
Location: 1178617 - 1181595 (+)
Gene ID: C54_scaffold_3399_815
Type: pfam
Location: 1181631 - 1183427 (+)
Type: pfam
Location: 1181631 - 1183427 (+)
Gene ID: C54_scaffold_3399_816
Type: pfam
Location: 1183446 - 1185125 (+)
Type: pfam
Location: 1183446 - 1185125 (+)
Gene ID: C54_scaffold_3399_817
Type: CAZyme
Location: 1185269 - 1186612 (+)
Type: CAZyme
Location: 1185269 - 1186612 (+)
Gene ID: C54_scaffold_3399_818
Type: CAZyme
Location: 1186614 - 1187939 (+)
Type: CAZyme
Location: 1186614 - 1187939 (+)
Gene ID: C54_scaffold_3399_819
Type: CAZyme
Location: 1187989 - 1190133 (+)
Type: CAZyme
Location: 1187989 - 1190133 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_814 | vegan > omnivore | 1.89249 | 0.01049 |
| C54_scaffold_3399_814 | vegetarian > omnivore | 2.47497 | 0.00141 |
| C54_scaffold_3399_815 | vegan > omnivore | 1.88348 | 0.01049 |
| C54_scaffold_3399_815 | vegetarian > omnivore | 2.39567 | 0.00141 |
| C54_scaffold_3399_816 | vegan > omnivore | 1.78319 | 0.01049 |
| C54_scaffold_3399_816 | vegetarian > omnivore | 2.45927 | 0.00141 |
| C54_scaffold_3399_817 | vegan > omnivore | 1.70148 | 0.01049 |
| C54_scaffold_3399_817 | vegetarian > omnivore | 2.41867 | 0.00141 |
| C54_scaffold_3399_818 | vegan > omnivore | 1.76837 | 0.01049 |
| C54_scaffold_3399_818 | vegetarian > omnivore | 2.53465 | 0.00141 |
| C54_scaffold_3399_819 | vegan > omnivore | 1.04902 | 0.01049 |
| C54_scaffold_3399_819 | vegetarian > omnivore | 1.52384 | 0.00141 |