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Cluster: C54.bin_6_CGC72

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C54_scaffold_3399 C54_scaffold_3399_645 925622 926569 + GH43_31
sulfatase C54_scaffold_3399 C54_scaffold_3399_646 926603 929080 + S1_4
TC C54_scaffold_3399 C54_scaffold_3399_647 929405 932653 + 1.B.14.6.1
pfam C54_scaffold_3399 C54_scaffold_3399_648 932676 934730 + SusD_RagB | SusD-like_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_649 934853 935857 + GH43_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_650 935880 937910 + GH182
sulfatase C54_scaffold_3399 C54_scaffold_3399_651 937932 939068 + S1_22
CAZyme C54_scaffold_3399 C54_scaffold_3399_652 939116 940231 + GH105
sulfatase C54_scaffold_3399 C54_scaffold_3399_653 940425 941975 + S1_67
TF C54_scaffold_3399 C54_scaffold_3399_654 942488 946513 + HTH_AraC | HTH_AraC
CAZyme C54_scaffold_3399 C54_scaffold_3399_655 946706 947809 + GH105
CAZyme C54_scaffold_3399 C54_scaffold_3399_656 947861 950581 + GH2
CAZyme C54_scaffold_3399 C54_scaffold_3399_657 950620 951768 + GH130_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_658 951832 952938 + GH105
CAZyme C54_scaffold_3399 C54_scaffold_3399_659 952959 955916 + GH115
CAZyme C54_scaffold_3399 C54_scaffold_3399_660 956382 958898 + GH31_15
pfam C54_scaffold_3399 C54_scaffold_3399_661 958910 961642 + Trehalase | Glyco_hydro_63 | Bac_rhamnosid6H | MGH1-like_GH
TC C54_scaffold_3399 C54_scaffold_3399_662 961978 965100 + 1.B.14.6.1
TC C54_scaffold_3399 C54_scaffold_3399_663 965136 966956 + 8.A.46.1.6
CAZyme C54_scaffold_3399 C54_scaffold_3399_664 966967 967998 + GH43_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_665 968063 968989 + GH43_3
CAZyme C54_scaffold_3399 C54_scaffold_3399_666 969012 971033 + GH182
pfam C54_scaffold_3399 C54_scaffold_3399_667 971144 971554 - YbeY
TC C54_scaffold_3399 C54_scaffold_3399_668 971581 972813 - 9.B.156.3.1
CAZyme C54_scaffold_3399 C54_scaffold_3399_669 973016 974974 + CE20 | CE20
Gene ID: C54_scaffold_3399_645
Type: CAZyme
Location: 925622 - 926569 (+)
Gene ID: C54_scaffold_3399_646
Type: sulfatase
Location: 926603 - 929080 (+)
Gene ID: C54_scaffold_3399_647
Type: TC
Location: 929405 - 932653 (+)
Gene ID: C54_scaffold_3399_648
Type: pfam
Location: 932676 - 934730 (+)
Gene ID: C54_scaffold_3399_649
Type: CAZyme
Location: 934853 - 935857 (+)
Gene ID: C54_scaffold_3399_650
Type: CAZyme
Location: 935880 - 937910 (+)
Gene ID: C54_scaffold_3399_651
Type: sulfatase
Location: 937932 - 939068 (+)
Gene ID: C54_scaffold_3399_652
Type: CAZyme
Location: 939116 - 940231 (+)
Gene ID: C54_scaffold_3399_653
Type: sulfatase
Location: 940425 - 941975 (+)
Gene ID: C54_scaffold_3399_654
Type: TF
Location: 942488 - 946513 (+)
Gene ID: C54_scaffold_3399_655
Type: CAZyme
Location: 946706 - 947809 (+)
Gene ID: C54_scaffold_3399_656
Type: CAZyme
Location: 947861 - 950581 (+)
Gene ID: C54_scaffold_3399_657
Type: CAZyme
Location: 950620 - 951768 (+)
Gene ID: C54_scaffold_3399_658
Type: CAZyme
Location: 951832 - 952938 (+)
Gene ID: C54_scaffold_3399_659
Type: CAZyme
Location: 952959 - 955916 (+)
Gene ID: C54_scaffold_3399_660
Type: CAZyme
Location: 956382 - 958898 (+)
Gene ID: C54_scaffold_3399_661
Type: pfam
Location: 958910 - 961642 (+)
Gene ID: C54_scaffold_3399_662
Type: TC
Location: 961978 - 965100 (+)
Gene ID: C54_scaffold_3399_663
Type: TC
Location: 965136 - 966956 (+)
Gene ID: C54_scaffold_3399_664
Type: CAZyme
Location: 966967 - 967998 (+)
Gene ID: C54_scaffold_3399_665
Type: CAZyme
Location: 968063 - 968989 (+)
Gene ID: C54_scaffold_3399_666
Type: CAZyme
Location: 969012 - 971033 (+)
Gene ID: C54_scaffold_3399_667
Type: pfam
Location: 971144 - 971554 (-)
Gene ID: C54_scaffold_3399_668
Type: TC
Location: 971581 - 972813 (-)
Gene ID: C54_scaffold_3399_669
Type: CAZyme
Location: 973016 - 974974 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C54_scaffold_3399_653 vegan > omnivore 2.02576 0.01049
C54_scaffold_3399_653 vegetarian > omnivore 1.18823 0.00141
C54_scaffold_3399_655 vegan > omnivore 2.33914 0.01049
C54_scaffold_3399_655 vegetarian > omnivore 1.14772 0.00141
C54_scaffold_3399_656 vegan > omnivore 1.20940 0.01049
C54_scaffold_3399_657 vegetarian > omnivore 1.67652 0.00141
C54_scaffold_3399_657 vegan > omnivore 2.45970 0.01049
C54_scaffold_3399_658 vegan > omnivore 2.76352 0.01049
C54_scaffold_3399_658 vegetarian > omnivore 2.19411 0.00141
C54_scaffold_3399_659 vegan > omnivore 1.90289 0.01049
C54_scaffold_3399_659 vegetarian > omnivore 1.05024 0.00141
C54_scaffold_3399_660 vegan > omnivore 2.27277 0.01049
C54_scaffold_3399_661 vegan > omnivore 2.16006 0.01049
C54_scaffold_3399_662 vegan > omnivore 2.63333 0.01049
C54_scaffold_3399_662 vegetarian > omnivore 1.74794 0.00141
C54_scaffold_3399_663 vegan > omnivore 2.36448 0.01049
C54_scaffold_3399_663 vegetarian > omnivore 1.50296 0.00141
C54_scaffold_3399_664 vegan > omnivore 4.10862 0.01049
C54_scaffold_3399_664 vegetarian > omnivore 2.69681 0.00141

🧭 Explore Read Mapping of CGC

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