Cluster: C54.bin_6_CGC68
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 14
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02735
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_483 | 683754 | 685325 | + | 3.D.10.1.4 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_484 | 685287 | 685415 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_485 | 685431 | 686009 | - | Ferritin | Rubrerythrin | RUBY_RBDX |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_486 | 686285 | 687355 | - | GH43_29 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_487 | 687397 | 689418 | - | CBM51 | GH27 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_488 | 689470 | 692091 | - | GH31_4 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_489 | 692107 | 693468 | - | CBM6 | GH43_29 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_490 | 693487 | 695427 | - | GH97 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_491 | 695441 | 697066 | - | CBM91 | GH43_10 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_492 | 697121 | 698506 | - | CBM6 | GH43_29 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_493 | 698544 | 700958 | - | GH31_4 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_494 | 701129 | 703021 | - | GH97 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_495 | 703831 | 705750 | + | CE1 | CE1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_496 | 705933 | 708017 | + | GH43_35 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_497 | 708036 | 710408 | + | GH146 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_498 | 710417 | 712324 | - | GH97 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_499 | 712342 | 715449 | - | GH2 |
Gene ID: C54_scaffold_3399_483
Type: TC
Location: 683754 - 685325 (+)
Type: TC
Location: 683754 - 685325 (+)
Gene ID: C54_scaffold_3399_484
Type:
Location: 685287 - 685415 (-)
Type:
Location: 685287 - 685415 (-)
Gene ID: C54_scaffold_3399_485
Type: pfam
Location: 685431 - 686009 (-)
Type: pfam
Location: 685431 - 686009 (-)
Gene ID: C54_scaffold_3399_486
Type: CAZyme
Location: 686285 - 687355 (-)
Type: CAZyme
Location: 686285 - 687355 (-)
Gene ID: C54_scaffold_3399_487
Type: CAZyme
Location: 687397 - 689418 (-)
Type: CAZyme
Location: 687397 - 689418 (-)
Gene ID: C54_scaffold_3399_488
Type: CAZyme
Location: 689470 - 692091 (-)
Type: CAZyme
Location: 689470 - 692091 (-)
Gene ID: C54_scaffold_3399_489
Type: CAZyme
Location: 692107 - 693468 (-)
Type: CAZyme
Location: 692107 - 693468 (-)
Gene ID: C54_scaffold_3399_490
Type: CAZyme
Location: 693487 - 695427 (-)
Type: CAZyme
Location: 693487 - 695427 (-)
Gene ID: C54_scaffold_3399_491
Type: CAZyme
Location: 695441 - 697066 (-)
Type: CAZyme
Location: 695441 - 697066 (-)
Gene ID: C54_scaffold_3399_492
Type: CAZyme
Location: 697121 - 698506 (-)
Type: CAZyme
Location: 697121 - 698506 (-)
Gene ID: C54_scaffold_3399_493
Type: CAZyme
Location: 698544 - 700958 (-)
Type: CAZyme
Location: 698544 - 700958 (-)
Gene ID: C54_scaffold_3399_494
Type: CAZyme
Location: 701129 - 703021 (-)
Type: CAZyme
Location: 701129 - 703021 (-)
Gene ID: C54_scaffold_3399_495
Type: CAZyme
Location: 703831 - 705750 (+)
Type: CAZyme
Location: 703831 - 705750 (+)
Gene ID: C54_scaffold_3399_496
Type: CAZyme
Location: 705933 - 708017 (+)
Type: CAZyme
Location: 705933 - 708017 (+)
Gene ID: C54_scaffold_3399_497
Type: CAZyme
Location: 708036 - 710408 (+)
Type: CAZyme
Location: 708036 - 710408 (+)
Gene ID: C54_scaffold_3399_498
Type: CAZyme
Location: 710417 - 712324 (-)
Type: CAZyme
Location: 710417 - 712324 (-)
Gene ID: C54_scaffold_3399_499
Type: CAZyme
Location: 712342 - 715449 (-)
Type: CAZyme
Location: 712342 - 715449 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_486 | vegan > omnivore | 1.65943 | 0.01049 |
| C54_scaffold_3399_486 | vegetarian > omnivore | 1.40862 | 0.00141 |
| C54_scaffold_3399_487 | vegan > omnivore | 2.54745 | 0.01049 |
| C54_scaffold_3399_487 | vegetarian > omnivore | 2.26836 | 0.00141 |
| C54_scaffold_3399_488 | vegan > omnivore | 1.69255 | 0.01049 |
| C54_scaffold_3399_488 | vegetarian > omnivore | 1.36207 | 0.00141 |
| C54_scaffold_3399_489 | vegan > omnivore | 2.79572 | 0.01049 |
| C54_scaffold_3399_489 | vegetarian > omnivore | 2.07655 | 0.00141 |
| C54_scaffold_3399_490 | vegetarian > omnivore | 1.35557 | 0.00141 |
| C54_scaffold_3399_490 | vegan > omnivore | 1.29660 | 0.01049 |
| C54_scaffold_3399_496 | vegetarian > omnivore | 1.87233 | 0.00141 |
| C54_scaffold_3399_496 | vegan > omnivore | 1.82190 | 0.01049 |
| C54_scaffold_3399_497 | vegetarian > omnivore | 1.81087 | 0.00141 |
| C54_scaffold_3399_497 | vegan > omnivore | 1.54165 | 0.01049 |
| C54_scaffold_3399_498 | vegan > omnivore | 1.77432 | 0.01049 |
| C54_scaffold_3399_498 | vegetarian > omnivore | 1.43328 | 0.00141 |