Cluster: C54.bin_6_CGC67
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 7
- Substrate: xylan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00239
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_425 | 617513 | 618670 | + | CE1 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_426 | 618699 | 619397 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_427 | 619400 | 620851 | + | GH43_7 | GH43_7 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_428 | 621112 | 624243 | + | 1.B.14.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_429 | 624267 | 626003 | + | SusD_RagB |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_430 | 626237 | 627403 | + | CE1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_431 | 627411 | 628565 | + | CE1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_432 | 628609 | 629667 | + | GH43_17 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_433 | 629716 | 632304 | + | GH3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_434 | 632405 | 633736 | + | CBM6 | GH43_2 |
Gene ID: C54_scaffold_3399_425
Type: CAZyme
Location: 617513 - 618670 (+)
Type: CAZyme
Location: 617513 - 618670 (+)
Gene ID: C54_scaffold_3399_426
Type:
Location: 618699 - 619397 (+)
Type:
Location: 618699 - 619397 (+)
Gene ID: C54_scaffold_3399_427
Type: CAZyme
Location: 619400 - 620851 (+)
Type: CAZyme
Location: 619400 - 620851 (+)
Gene ID: C54_scaffold_3399_428
Type: TC
Location: 621112 - 624243 (+)
Type: TC
Location: 621112 - 624243 (+)
Gene ID: C54_scaffold_3399_429
Type: pfam
Location: 624267 - 626003 (+)
Type: pfam
Location: 624267 - 626003 (+)
Gene ID: C54_scaffold_3399_430
Type: CAZyme
Location: 626237 - 627403 (+)
Type: CAZyme
Location: 626237 - 627403 (+)
Gene ID: C54_scaffold_3399_431
Type: CAZyme
Location: 627411 - 628565 (+)
Type: CAZyme
Location: 627411 - 628565 (+)
Gene ID: C54_scaffold_3399_432
Type: CAZyme
Location: 628609 - 629667 (+)
Type: CAZyme
Location: 628609 - 629667 (+)
Gene ID: C54_scaffold_3399_433
Type: CAZyme
Location: 629716 - 632304 (+)
Type: CAZyme
Location: 629716 - 632304 (+)
Gene ID: C54_scaffold_3399_434
Type: CAZyme
Location: 632405 - 633736 (+)
Type: CAZyme
Location: 632405 - 633736 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_425 | vegetarian > omnivore | 1.36745 | 0.00141 |
| C54_scaffold_3399_426 | vegan > omnivore | 1.59230 | 0.01049 |
| C54_scaffold_3399_426 | vegetarian > omnivore | 2.23375 | 0.00141 |
| C54_scaffold_3399_427 | vegetarian > omnivore | 1.29163 | 0.00141 |
| C54_scaffold_3399_428 | vegan > omnivore | 1.19009 | 0.01049 |
| C54_scaffold_3399_428 | vegetarian > vegan | 1.14971 | 0.00827 |
| C54_scaffold_3399_428 | vegetarian > omnivore | 2.33980 | 0.00141 |
| C54_scaffold_3399_429 | vegetarian > omnivore | 2.33534 | 0.00141 |
| C54_scaffold_3399_429 | vegan > omnivore | 2.10633 | 0.01049 |
| C54_scaffold_3399_430 | vegetarian > omnivore | 2.60941 | 0.00141 |
| C54_scaffold_3399_430 | vegan > omnivore | 2.71229 | 0.01049 |
| C54_scaffold_3399_431 | vegetarian > omnivore | 1.71922 | 0.00141 |
| C54_scaffold_3399_431 | vegan > omnivore | 2.10560 | 0.01049 |
| C54_scaffold_3399_432 | vegetarian > omnivore | 1.96034 | 0.00141 |
| C54_scaffold_3399_432 | vegan > omnivore | 1.56377 | 0.01049 |
| C54_scaffold_3399_433 | vegetarian > omnivore | 1.90068 | 0.00141 |
| C54_scaffold_3399_433 | vegan > omnivore | 1.33100 | 0.01049 |
| C54_scaffold_3399_434 | vegetarian > omnivore | 1.37366 | 0.00141 |