Cluster: C54.bin_6_CGC65
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: arabinogalactan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00928
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_367 | 538740 | 541259 | - | GH51_2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_368 | 541499 | 542842 | - | CBM32 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_369 | 542868 | 544886 | - | SusD_RagB | SusD-like_3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_370 | 544911 | 548081 | - | 1.B.14.6.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_371 | 548288 | 550684 | - | GH2 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_372 | 550986 | 554864 | - | HTH_AraC |
| TC | C54_scaffold_3399 | C54_scaffold_3399_373 | 554985 | 556103 | - | 3.A.11.1.3 |
Gene ID: C54_scaffold_3399_367
Type: CAZyme
Location: 538740 - 541259 (-)
Type: CAZyme
Location: 538740 - 541259 (-)
Gene ID: C54_scaffold_3399_368
Type: CAZyme
Location: 541499 - 542842 (-)
Type: CAZyme
Location: 541499 - 542842 (-)
Gene ID: C54_scaffold_3399_369
Type: pfam
Location: 542868 - 544886 (-)
Type: pfam
Location: 542868 - 544886 (-)
Gene ID: C54_scaffold_3399_370
Type: TC
Location: 544911 - 548081 (-)
Type: TC
Location: 544911 - 548081 (-)
Gene ID: C54_scaffold_3399_371
Type: CAZyme
Location: 548288 - 550684 (-)
Type: CAZyme
Location: 548288 - 550684 (-)
Gene ID: C54_scaffold_3399_372
Type: TF
Location: 550986 - 554864 (-)
Type: TF
Location: 550986 - 554864 (-)
Gene ID: C54_scaffold_3399_373
Type: TC
Location: 554985 - 556103 (-)
Type: TC
Location: 554985 - 556103 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_368 | vegan > omnivore | 1.62686 | 0.01049 |
| C54_scaffold_3399_368 | vegetarian > omnivore | 2.52901 | 0.00141 |
| C54_scaffold_3399_371 | vegan > omnivore | 1.45117 | 0.01049 |
| C54_scaffold_3399_371 | vegetarian > omnivore | 1.31989 | 0.00141 |