Cluster: C54.bin_6_CGC60
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00740
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_266 | 371464 | 374739 | + | GH106 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_267 | 374834 | 375190 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | C54_scaffold_3399 | C54_scaffold_3399_268 | 375285 | 376712 | - | S1_14 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_269 | 376672 | 378477 | - | CBM32 | GH43_28 |
| sulfatase | C54_scaffold_3399 | C54_scaffold_3399_270 | 378508 | 379896 | - | S1_9 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_271 | 379922 | 382306 | - | GH154 | GH88 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_272 | 382829 | 384379 | - | GH50 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_273 | 384400 | 386220 | - | BACON | BACON | BACON_2 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_274 | 386263 | 387867 | - | SusD_RagB | SusD-like_3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_275 | 387886 | 390945 | - | 1.B.14.6.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_276 | 391073 | 394099 | - | CBM96 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_277 | 394123 | 396381 | - | CE20 | CE6 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_278 | 396570 | 399449 | - | GH2 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_279 | 399472 | 403503 | - | HTH_AraC |
| TC | C54_scaffold_3399 | C54_scaffold_3399_280 | 403757 | 404545 | + | 9.B.116.3.2 |
Gene ID: C54_scaffold_3399_266
Type: CAZyme
Location: 371464 - 374739 (+)
Type: CAZyme
Location: 371464 - 374739 (+)
Gene ID: C54_scaffold_3399_267
Type:
Location: 374834 - 375190 (-)
Type:
Location: 374834 - 375190 (-)
Gene ID: C54_scaffold_3399_268
Type: sulfatase
Location: 375285 - 376712 (-)
Type: sulfatase
Location: 375285 - 376712 (-)
Gene ID: C54_scaffold_3399_269
Type: CAZyme
Location: 376672 - 378477 (-)
Type: CAZyme
Location: 376672 - 378477 (-)
Gene ID: C54_scaffold_3399_270
Type: sulfatase
Location: 378508 - 379896 (-)
Type: sulfatase
Location: 378508 - 379896 (-)
Gene ID: C54_scaffold_3399_271
Type: CAZyme
Location: 379922 - 382306 (-)
Type: CAZyme
Location: 379922 - 382306 (-)
Gene ID: C54_scaffold_3399_272
Type: CAZyme
Location: 382829 - 384379 (-)
Type: CAZyme
Location: 382829 - 384379 (-)
Gene ID: C54_scaffold_3399_273
Type: pfam
Location: 384400 - 386220 (-)
Type: pfam
Location: 384400 - 386220 (-)
Gene ID: C54_scaffold_3399_274
Type: pfam
Location: 386263 - 387867 (-)
Type: pfam
Location: 386263 - 387867 (-)
Gene ID: C54_scaffold_3399_275
Type: TC
Location: 387886 - 390945 (-)
Type: TC
Location: 387886 - 390945 (-)
Gene ID: C54_scaffold_3399_276
Type: CAZyme
Location: 391073 - 394099 (-)
Type: CAZyme
Location: 391073 - 394099 (-)
Gene ID: C54_scaffold_3399_277
Type: CAZyme
Location: 394123 - 396381 (-)
Type: CAZyme
Location: 394123 - 396381 (-)
Gene ID: C54_scaffold_3399_278
Type: CAZyme
Location: 396570 - 399449 (-)
Type: CAZyme
Location: 396570 - 399449 (-)
Gene ID: C54_scaffold_3399_279
Type: TF
Location: 399472 - 403503 (-)
Type: TF
Location: 399472 - 403503 (-)
Gene ID: C54_scaffold_3399_280
Type: TC
Location: 403757 - 404545 (+)
Type: TC
Location: 403757 - 404545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_280 | vegan > omnivore | 2.01708 | 0.01049 |
| C54_scaffold_3399_280 | vegetarian > omnivore | 2.53366 | 0.00141 |