Cluster: C54.bin_6_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00547
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_5485 | C54_contig_5485_103 | 154927 | 156777 | - | GH13_46 |
| STP | C54_contig_5485 | C54_contig_5485_104 | 156889 | 158256 | - | TPR_1 |
| TC | C54_contig_5485 | C54_contig_5485_105 | 158441 | 159601 | - | 3.B.1.1.2 |
| pfam | C54_contig_5485 | C54_contig_5485_106 | 159603 | 160031 | - | Biotin_lipoyl | Biotin_lipoyl_2 |
| pfam | C54_contig_5485 | C54_contig_5485_107 | 160054 | 160986 | - | LTD | OAD_gamma |
| TC | C54_contig_5485 | C54_contig_5485_108 | 161019 | 162572 | - | 3.B.1.1.2 |
| STP | C54_contig_5485 | C54_contig_5485_109 | 162695 | 163102 | - | Glyoxalase |
| TC | C54_contig_5485 | C54_contig_5485_110 | 163247 | 165658 | - | 1.B.14.6.7 |
Gene ID: C54_contig_5485_103
Type: CAZyme
Location: 154927 - 156777 (-)
Type: CAZyme
Location: 154927 - 156777 (-)
Gene ID: C54_contig_5485_104
Type: STP
Location: 156889 - 158256 (-)
Type: STP
Location: 156889 - 158256 (-)
Gene ID: C54_contig_5485_105
Type: TC
Location: 158441 - 159601 (-)
Type: TC
Location: 158441 - 159601 (-)
Gene ID: C54_contig_5485_106
Type: pfam
Location: 159603 - 160031 (-)
Type: pfam
Location: 159603 - 160031 (-)
Gene ID: C54_contig_5485_107
Type: pfam
Location: 160054 - 160986 (-)
Type: pfam
Location: 160054 - 160986 (-)
Gene ID: C54_contig_5485_108
Type: TC
Location: 161019 - 162572 (-)
Type: TC
Location: 161019 - 162572 (-)
Gene ID: C54_contig_5485_109
Type: STP
Location: 162695 - 163102 (-)
Type: STP
Location: 162695 - 163102 (-)
Gene ID: C54_contig_5485_110
Type: TC
Location: 163247 - 165658 (-)
Type: TC
Location: 163247 - 165658 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_5485_104 | vegan > omnivore | 1.33996 | 0.01049 |
| C54_contig_5485_104 | vegetarian > omnivore | 1.84052 | 0.00141 |
| C54_contig_5485_110 | vegan > omnivore | 1.64696 | 0.01049 |
| C54_contig_5485_110 | vegetarian > omnivore | 2.38939 | 0.00141 |