Cluster: C54.bin_6_CGC59
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 9
- Substrate:
- Genome ID: C54.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_180 | 239393 | 241906 | + | 9.B.144.1.4 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_181 | 241997 | 242875 | - | HTH_AraC | HTH_AraC |
| TC | C54_scaffold_3399 | C54_scaffold_3399_182 | 243059 | 244444 | + | 2.A.1.1.3 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_183 | 244543 | 247866 | + | TPR_8 | TPR_8 | DUF5107 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_184 | 247990 | 249330 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_scaffold_3399 | C54_scaffold_3399_185 | 249350 | 252361 | + | 1.B.14.6.1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_186 | 252381 | 253997 | + | 8.A.46.1.3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_187 | 254080 | 255714 | + | GH30_4 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_188 | 255733 | 256245 | + | Glyco_hydro_2_N |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_189 | 256187 | 258520 | + | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_190 | 258636 | 261032 | - | GH31_4 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_191 | 261081 | 261764 | - | DUF3823 | DUF3823_C |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_192 | 261794 | 263608 | - | SusD_RagB | SusD-like_3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_193 | 263671 | 266829 | - | 1.B.14.6.1 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_194 | 267293 | 271324 | - | HTH_AraC |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_195 | 271480 | 272016 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_196 | 272688 | 277448 | - | CBM67 | GH78 | PL8_3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_197 | 277464 | 278654 | - | GH88 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_198 | 278742 | 281333 | - | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_199 | 281364 | 284069 | - | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_200 | 284135 | 285565 | - | GH28 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_201 | 285633 | 286010 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_scaffold_3399 | C54_scaffold_3399_202 | 286045 | 287733 | - | 8.A.46.1.3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_203 | 287746 | 290907 | - | 1.B.14.6.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_204 | 291520 | 294186 | - | CBM67 | GH78 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_205 | 294428 | 298489 | + | HTH_AraC |
| TC | C54_scaffold_3399 | C54_scaffold_3399_206 | 298558 | 299790 | - | 3.A.1.125.1 |
Gene ID: C54_scaffold_3399_180
Type: TC
Location: 239393 - 241906 (+)
Type: TC
Location: 239393 - 241906 (+)
Gene ID: C54_scaffold_3399_181
Type: TF
Location: 241997 - 242875 (-)
Type: TF
Location: 241997 - 242875 (-)
Gene ID: C54_scaffold_3399_182
Type: TC
Location: 243059 - 244444 (+)
Type: TC
Location: 243059 - 244444 (+)
Gene ID: C54_scaffold_3399_183
Type: pfam
Location: 244543 - 247866 (+)
Type: pfam
Location: 244543 - 247866 (+)
Gene ID: C54_scaffold_3399_184
Type:
Location: 247990 - 249330 (+)
Type:
Location: 247990 - 249330 (+)
Gene ID: C54_scaffold_3399_185
Type: TC
Location: 249350 - 252361 (+)
Type: TC
Location: 249350 - 252361 (+)
Gene ID: C54_scaffold_3399_186
Type: TC
Location: 252381 - 253997 (+)
Type: TC
Location: 252381 - 253997 (+)
Gene ID: C54_scaffold_3399_187
Type: CAZyme
Location: 254080 - 255714 (+)
Type: CAZyme
Location: 254080 - 255714 (+)
Gene ID: C54_scaffold_3399_188
Type: pfam
Location: 255733 - 256245 (+)
Type: pfam
Location: 255733 - 256245 (+)
Gene ID: C54_scaffold_3399_189
Type: CAZyme
Location: 256187 - 258520 (+)
Type: CAZyme
Location: 256187 - 258520 (+)
Gene ID: C54_scaffold_3399_190
Type: CAZyme
Location: 258636 - 261032 (-)
Type: CAZyme
Location: 258636 - 261032 (-)
Gene ID: C54_scaffold_3399_191
Type: pfam
Location: 261081 - 261764 (-)
Type: pfam
Location: 261081 - 261764 (-)
Gene ID: C54_scaffold_3399_192
Type: pfam
Location: 261794 - 263608 (-)
Type: pfam
Location: 261794 - 263608 (-)
Gene ID: C54_scaffold_3399_193
Type: TC
Location: 263671 - 266829 (-)
Type: TC
Location: 263671 - 266829 (-)
Gene ID: C54_scaffold_3399_194
Type: TF
Location: 267293 - 271324 (-)
Type: TF
Location: 267293 - 271324 (-)
Gene ID: C54_scaffold_3399_195
Type:
Location: 271480 - 272016 (-)
Type:
Location: 271480 - 272016 (-)
Gene ID: C54_scaffold_3399_196
Type: CAZyme
Location: 272688 - 277448 (-)
Type: CAZyme
Location: 272688 - 277448 (-)
Gene ID: C54_scaffold_3399_197
Type: CAZyme
Location: 277464 - 278654 (-)
Type: CAZyme
Location: 277464 - 278654 (-)
Gene ID: C54_scaffold_3399_198
Type: CAZyme
Location: 278742 - 281333 (-)
Type: CAZyme
Location: 278742 - 281333 (-)
Gene ID: C54_scaffold_3399_199
Type: CAZyme
Location: 281364 - 284069 (-)
Type: CAZyme
Location: 281364 - 284069 (-)
Gene ID: C54_scaffold_3399_200
Type: CAZyme
Location: 284135 - 285565 (-)
Type: CAZyme
Location: 284135 - 285565 (-)
Gene ID: C54_scaffold_3399_201
Type:
Location: 285633 - 286010 (-)
Type:
Location: 285633 - 286010 (-)
Gene ID: C54_scaffold_3399_202
Type: TC
Location: 286045 - 287733 (-)
Type: TC
Location: 286045 - 287733 (-)
Gene ID: C54_scaffold_3399_203
Type: TC
Location: 287746 - 290907 (-)
Type: TC
Location: 287746 - 290907 (-)
Gene ID: C54_scaffold_3399_204
Type: CAZyme
Location: 291520 - 294186 (-)
Type: CAZyme
Location: 291520 - 294186 (-)
Gene ID: C54_scaffold_3399_205
Type: TF
Location: 294428 - 298489 (+)
Type: TF
Location: 294428 - 298489 (+)
Gene ID: C54_scaffold_3399_206
Type: TC
Location: 298558 - 299790 (-)
Type: TC
Location: 298558 - 299790 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_189 | vegan > omnivore | 1.02935 | 0.01049 |
| C54_scaffold_3399_189 | vegetarian > omnivore | 1.35697 | 0.00141 |
| C54_scaffold_3399_191 | vegan > omnivore | 3.35866 | 0.01049 |
| C54_scaffold_3399_191 | vegetarian > omnivore | 3.50207 | 0.00141 |
| C54_scaffold_3399_192 | vegan > omnivore | 4.04341 | 0.01049 |
| C54_scaffold_3399_192 | vegetarian > omnivore | 4.08317 | 0.00141 |
| C54_scaffold_3399_194 | vegan > omnivore | 4.30427 | 0.01049 |
| C54_scaffold_3399_194 | vegetarian > omnivore | 4.51811 | 0.00141 |