Cluster: C54.bin_6_CGC56
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00275
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_114 | 138206 | 139930 | - | CBM32 | GH43_28 |
| sulfatase | C54_scaffold_3399 | C54_scaffold_3399_115 | 139947 | 141515 | - | S1_11 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_116 | 141520 | 142374 | - | Exo_endo_phos |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_117 | 142390 | 143700 | - | GH144 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_118 | 143716 | 145380 | - | GH144 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_119 | 145380 | 146219 | - | Laminin_G_3 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_120 | 146231 | 147748 | - | SusD_RagB | SusD-like_3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_121 | 147781 | 150756 | - | 1.B.14.6.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_122 | 150989 | 153280 | - | GH3 |
| STP | C54_scaffold_3399 | C54_scaffold_3399_123 | 153451 | 156288 | - | Y_Y_Y |
| TC | C54_scaffold_3399 | C54_scaffold_3399_124 | 156436 | 158193 | - | 9.B.174.1.1 |
Gene ID: C54_scaffold_3399_114
Type: CAZyme
Location: 138206 - 139930 (-)
Type: CAZyme
Location: 138206 - 139930 (-)
Gene ID: C54_scaffold_3399_115
Type: sulfatase
Location: 139947 - 141515 (-)
Type: sulfatase
Location: 139947 - 141515 (-)
Gene ID: C54_scaffold_3399_116
Type: pfam
Location: 141520 - 142374 (-)
Type: pfam
Location: 141520 - 142374 (-)
Gene ID: C54_scaffold_3399_117
Type: CAZyme
Location: 142390 - 143700 (-)
Type: CAZyme
Location: 142390 - 143700 (-)
Gene ID: C54_scaffold_3399_118
Type: CAZyme
Location: 143716 - 145380 (-)
Type: CAZyme
Location: 143716 - 145380 (-)
Gene ID: C54_scaffold_3399_119
Type: pfam
Location: 145380 - 146219 (-)
Type: pfam
Location: 145380 - 146219 (-)
Gene ID: C54_scaffold_3399_120
Type: pfam
Location: 146231 - 147748 (-)
Type: pfam
Location: 146231 - 147748 (-)
Gene ID: C54_scaffold_3399_121
Type: TC
Location: 147781 - 150756 (-)
Type: TC
Location: 147781 - 150756 (-)
Gene ID: C54_scaffold_3399_122
Type: CAZyme
Location: 150989 - 153280 (-)
Type: CAZyme
Location: 150989 - 153280 (-)
Gene ID: C54_scaffold_3399_123
Type: STP
Location: 153451 - 156288 (-)
Type: STP
Location: 153451 - 156288 (-)
Gene ID: C54_scaffold_3399_124
Type: TC
Location: 156436 - 158193 (-)
Type: TC
Location: 156436 - 158193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_115 | vegan > omnivore | 1.30047 | 0.01049 |
| C54_scaffold_3399_116 | vegan > omnivore | 1.79162 | 0.01049 |
| C54_scaffold_3399_116 | vegetarian > omnivore | 2.07651 | 0.00141 |
| C54_scaffold_3399_117 | vegan > omnivore | 1.44048 | 0.01049 |
| C54_scaffold_3399_118 | vegan > omnivore | 1.14934 | 0.01049 |
| C54_scaffold_3399_119 | vegan > omnivore | 1.84889 | 0.01049 |
| C54_scaffold_3399_119 | vegetarian > omnivore | 1.37708 | 0.00141 |
| C54_scaffold_3399_121 | vegan > omnivore | 1.08440 | 0.01049 |
| C54_scaffold_3399_123 | vegan > omnivore | 1.55312 | 0.01049 |