Cluster: C54.bin_6_CGC52
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00361
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_1705 | 2016795 | 2017835 | + | 9.B.97.3.1 |
| pfam | C54_contig_3258 | C54_contig_3258_1706 | 2017839 | 2019014 | + | DUF418 |
| pfam | C54_contig_3258 | C54_contig_3258_1707 | 2019030 | 2019689 | - | DUF2490 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1708 | 2019789 | 2021087 | - | GH105 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1709 | 2021084 | 2022478 | - | PL1_2 |
| pfam | C54_contig_3258 | C54_contig_3258_1710 | 2022524 | 2024248 | - | fn3 | DUF5123 |
| TC | C54_contig_3258 | C54_contig_3258_1711 | 2024259 | 2026259 | - | 8.A.46.1.3 |
| TC | C54_contig_3258 | C54_contig_3258_1712 | 2026277 | 2029795 | - | 1.B.14.6.1 |
Gene ID: C54_contig_3258_1705
Type: TC
Location: 2016795 - 2017835 (+)
Type: TC
Location: 2016795 - 2017835 (+)
Gene ID: C54_contig_3258_1706
Type: pfam
Location: 2017839 - 2019014 (+)
Type: pfam
Location: 2017839 - 2019014 (+)
Gene ID: C54_contig_3258_1707
Type: pfam
Location: 2019030 - 2019689 (-)
Type: pfam
Location: 2019030 - 2019689 (-)
Gene ID: C54_contig_3258_1708
Type: CAZyme
Location: 2019789 - 2021087 (-)
Type: CAZyme
Location: 2019789 - 2021087 (-)
Gene ID: C54_contig_3258_1709
Type: CAZyme
Location: 2021084 - 2022478 (-)
Type: CAZyme
Location: 2021084 - 2022478 (-)
Gene ID: C54_contig_3258_1710
Type: pfam
Location: 2022524 - 2024248 (-)
Type: pfam
Location: 2022524 - 2024248 (-)
Gene ID: C54_contig_3258_1711
Type: TC
Location: 2024259 - 2026259 (-)
Type: TC
Location: 2024259 - 2026259 (-)
Gene ID: C54_contig_3258_1712
Type: TC
Location: 2026277 - 2029795 (-)
Type: TC
Location: 2026277 - 2029795 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_1705 | vegetarian > omnivore | 1.70356 | 0.00141 |
| C54_contig_3258_1706 | vegetarian > omnivore | 1.61454 | 0.00141 |
| C54_contig_3258_1707 | vegetarian > omnivore | 1.12205 | 0.00141 |
| C54_contig_3258_1708 | vegetarian > omnivore | 1.39713 | 0.00141 |
| C54_contig_3258_1709 | vegan > omnivore | 1.16164 | 0.01049 |
| C54_contig_3258_1709 | vegetarian > omnivore | 1.66724 | 0.00141 |
| C54_contig_3258_1710 | vegan > omnivore | 1.83736 | 0.01049 |
| C54_contig_3258_1710 | vegetarian > omnivore | 1.83351 | 0.00141 |
| C54_contig_3258_1711 | vegetarian > omnivore | 1.97321 | 0.00141 |
| C54_contig_3258_1711 | vegan > omnivore | 1.89893 | 0.01049 |
| C54_contig_3258_1712 | vegetarian > omnivore | 1.03419 | 0.00141 |
| C54_contig_3258_1712 | vegan > omnivore | 1.40206 | 0.01049 |