Cluster: C54.bin_6_CGC51
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00143
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_3258 | C54_contig_3258_1617 | 1905750 | 1906847 | - | GH105 |
| TC | C54_contig_3258 | C54_contig_3258_1618 | 1906864 | 1908636 | - | 8.A.46.1.6 |
| TC | C54_contig_3258 | C54_contig_3258_1619 | 1908647 | 1911733 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_1620 | 1911760 | 1913745 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_3258 | C54_contig_3258_1621 | 1913742 | 1914968 | - | GH154 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1622 | 1914987 | 1916219 | - | GH154 |
| TF | C54_contig_3258 | C54_contig_3258_1623 | 1916427 | 1920401 | + | HTH_AraC |
| pfam | C54_contig_3258 | C54_contig_3258_1624 | 1920406 | 1923801 | - | DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter |
| CAZyme | C54_contig_3258 | C54_contig_3258_1625 | 1923896 | 1924648 | + | GT2 |
Gene ID: C54_contig_3258_1617
Type: CAZyme
Location: 1905750 - 1906847 (-)
Type: CAZyme
Location: 1905750 - 1906847 (-)
Gene ID: C54_contig_3258_1618
Type: TC
Location: 1906864 - 1908636 (-)
Type: TC
Location: 1906864 - 1908636 (-)
Gene ID: C54_contig_3258_1619
Type: TC
Location: 1908647 - 1911733 (-)
Type: TC
Location: 1908647 - 1911733 (-)
Gene ID: C54_contig_3258_1620
Type:
Location: 1911760 - 1913745 (-)
Type:
Location: 1911760 - 1913745 (-)
Gene ID: C54_contig_3258_1621
Type: CAZyme
Location: 1913742 - 1914968 (-)
Type: CAZyme
Location: 1913742 - 1914968 (-)
Gene ID: C54_contig_3258_1622
Type: CAZyme
Location: 1914987 - 1916219 (-)
Type: CAZyme
Location: 1914987 - 1916219 (-)
Gene ID: C54_contig_3258_1623
Type: TF
Location: 1916427 - 1920401 (+)
Type: TF
Location: 1916427 - 1920401 (+)
Gene ID: C54_contig_3258_1624
Type: pfam
Location: 1920406 - 1923801 (-)
Type: pfam
Location: 1920406 - 1923801 (-)
Gene ID: C54_contig_3258_1625
Type: CAZyme
Location: 1923896 - 1924648 (+)
Type: CAZyme
Location: 1923896 - 1924648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.