Cluster: C54.bin_6_CGC45
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01269
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_1364 | 1587950 | 1589278 | + | 2.A.66.1.13 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_1365 | 1589281 | 1589394 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_contig_3258 | C54_contig_3258_1366 | 1589375 | 1590049 | + | 9.B.186.1.3 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1367 | 1590172 | 1590909 | + | GT51 |
| pfam | C54_contig_3258 | C54_contig_3258_1368 | 1590943 | 1592193 | + | T9SS_plug_1st |
| pfam | C54_contig_3258 | C54_contig_3258_1369 | 1592447 | 1593592 | - | Cyt_bd_oxida_II |
| TC | C54_contig_3258 | C54_contig_3258_1370 | 1593619 | 1595169 | - | 3.D.4.3.2 |
| pfam | C54_contig_3258 | C54_contig_3258_1371 | 1595196 | 1595429 | - | DUF4492 |
| pfam | C54_contig_3258 | C54_contig_3258_1372 | 1595621 | 1597048 | + | OEP | OEP |
| TC | C54_contig_3258 | C54_contig_3258_1373 | 1597092 | 1598315 | + | 3.A.1.122.12 |
| TC | C54_contig_3258 | C54_contig_3258_1374 | 1598323 | 1599069 | + | 3.A.1.122.2 |
| TC | C54_contig_3258 | C54_contig_3258_1375 | 1599082 | 1600302 | + | 3.A.1.122.1 |
Gene ID: C54_contig_3258_1364
Type: TC
Location: 1587950 - 1589278 (+)
Type: TC
Location: 1587950 - 1589278 (+)
Gene ID: C54_contig_3258_1365
Type:
Location: 1589281 - 1589394 (+)
Type:
Location: 1589281 - 1589394 (+)
Gene ID: C54_contig_3258_1366
Type: TC
Location: 1589375 - 1590049 (+)
Type: TC
Location: 1589375 - 1590049 (+)
Gene ID: C54_contig_3258_1367
Type: CAZyme
Location: 1590172 - 1590909 (+)
Type: CAZyme
Location: 1590172 - 1590909 (+)
Gene ID: C54_contig_3258_1368
Type: pfam
Location: 1590943 - 1592193 (+)
Type: pfam
Location: 1590943 - 1592193 (+)
Gene ID: C54_contig_3258_1369
Type: pfam
Location: 1592447 - 1593592 (-)
Type: pfam
Location: 1592447 - 1593592 (-)
Gene ID: C54_contig_3258_1370
Type: TC
Location: 1593619 - 1595169 (-)
Type: TC
Location: 1593619 - 1595169 (-)
Gene ID: C54_contig_3258_1371
Type: pfam
Location: 1595196 - 1595429 (-)
Type: pfam
Location: 1595196 - 1595429 (-)
Gene ID: C54_contig_3258_1372
Type: pfam
Location: 1595621 - 1597048 (+)
Type: pfam
Location: 1595621 - 1597048 (+)
Gene ID: C54_contig_3258_1373
Type: TC
Location: 1597092 - 1598315 (+)
Type: TC
Location: 1597092 - 1598315 (+)
Gene ID: C54_contig_3258_1374
Type: TC
Location: 1598323 - 1599069 (+)
Type: TC
Location: 1598323 - 1599069 (+)
Gene ID: C54_contig_3258_1375
Type: TC
Location: 1599082 - 1600302 (+)
Type: TC
Location: 1599082 - 1600302 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_1365 | vegan > omnivore | 1.02558 | 0.01049 |
| C54_contig_3258_1365 | vegetarian > omnivore | 1.13417 | 0.00141 |
| C54_contig_3258_1368 | vegan > omnivore | 1.80121 | 0.01049 |
| C54_contig_3258_1368 | vegetarian > omnivore | 2.65842 | 0.00141 |