Cluster: C54.bin_6_CGC44
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01426
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_3258 | C54_contig_3258_1343 | 1555938 | 1557134 | + | GT2 |
| STP | C54_contig_3258 | C54_contig_3258_1344 | 1557174 | 1559828 | + | HATPase_c | HisKA | Response_reg |
| TC | C54_contig_3258 | C54_contig_3258_1345 | 1559923 | 1561698 | - | 3.B.1.1.6 |
| STP | C54_contig_3258 | C54_contig_3258_1346 | 1562005 | 1562508 | - | Sigma70_r2 | Sigma70_r4_2 |
| peptidase | C54_contig_3258 | C54_contig_3258_1347 | 1562774 | 1565674 | + | M16.019 |
| TC | C54_contig_3258 | C54_contig_3258_1348 | 1565781 | 1566419 | - | 1.A.62.2.1 |
| pfam | C54_contig_3258 | C54_contig_3258_1349 | 1566460 | 1567635 | + | Epimerase_2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1350 | 1567646 | 1568509 | - | GT2 |
| TC | C54_contig_3258 | C54_contig_3258_1351 | 1568621 | 1571242 | + | 1.B.14.6.14 |
Gene ID: C54_contig_3258_1343
Type: CAZyme
Location: 1555938 - 1557134 (+)
Type: CAZyme
Location: 1555938 - 1557134 (+)
Gene ID: C54_contig_3258_1344
Type: STP
Location: 1557174 - 1559828 (+)
Type: STP
Location: 1557174 - 1559828 (+)
Gene ID: C54_contig_3258_1345
Type: TC
Location: 1559923 - 1561698 (-)
Type: TC
Location: 1559923 - 1561698 (-)
Gene ID: C54_contig_3258_1346
Type: STP
Location: 1562005 - 1562508 (-)
Type: STP
Location: 1562005 - 1562508 (-)
Gene ID: C54_contig_3258_1347
Type: peptidase
Location: 1562774 - 1565674 (+)
Type: peptidase
Location: 1562774 - 1565674 (+)
Gene ID: C54_contig_3258_1348
Type: TC
Location: 1565781 - 1566419 (-)
Type: TC
Location: 1565781 - 1566419 (-)
Gene ID: C54_contig_3258_1349
Type: pfam
Location: 1566460 - 1567635 (+)
Type: pfam
Location: 1566460 - 1567635 (+)
Gene ID: C54_contig_3258_1350
Type: CAZyme
Location: 1567646 - 1568509 (-)
Type: CAZyme
Location: 1567646 - 1568509 (-)
Gene ID: C54_contig_3258_1351
Type: TC
Location: 1568621 - 1571242 (+)
Type: TC
Location: 1568621 - 1571242 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_1348 | vegan > omnivore | 1.04665 | 0.01049 |