Cluster: C54.bin_6_CGC38
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_734 | 872123 | 873082 | + | 3.A.5.1.1 |
| pfam | C54_contig_3258 | C54_contig_3258_735 | 873079 | 874377 | + | UPF0004 | Radical_SAM | TRAM_2 |
| pfam | C54_contig_3258 | C54_contig_3258_736 | 874455 | 874727 | + | Bac_DNA_binding | HU-HIG |
| CAZyme | C54_contig_3258 | C54_contig_3258_737 | 874761 | 876062 | + | CBM50 |
Gene ID: C54_contig_3258_734
Type: TC
Location: 872123 - 873082 (+)
Type: TC
Location: 872123 - 873082 (+)
Gene ID: C54_contig_3258_735
Type: pfam
Location: 873079 - 874377 (+)
Type: pfam
Location: 873079 - 874377 (+)
Gene ID: C54_contig_3258_736
Type: pfam
Location: 874455 - 874727 (+)
Type: pfam
Location: 874455 - 874727 (+)
Gene ID: C54_contig_3258_737
Type: CAZyme
Location: 874761 - 876062 (+)
Type: CAZyme
Location: 874761 - 876062 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_736 | vegan > omnivore | 1.27837 | 0.01049 |
| C54_contig_3258_736 | vegetarian > omnivore | 1.24374 | 0.00141 |