Cluster: C54.bin_6_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_05254
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_502 | 582286 | 584679 | - | 1.B.14.6.5 |
| pfam | C54_contig_3258 | C54_contig_3258_503 | 584736 | 585158 | - | ACT_3 | ACT_7 |
| TC | C54_contig_3258 | C54_contig_3258_504 | 585267 | 586871 | - | 3.A.1.120.6 |
| STP | C54_contig_3258 | C54_contig_3258_505 | 587334 | 589463 | + | GAF | HATPase_c | HisKA | Response_reg |
| pfam | C54_contig_3258 | C54_contig_3258_506 | 589483 | 589962 | - | dCMP_cyt_deam_1 | dCMP_cyt_deam_2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_507 | 590070 | 590987 | + | GH73 |
| TC | C54_contig_3258 | C54_contig_3258_508 | 591063 | 593618 | - | 1.B.14.6.10 |
Gene ID: C54_contig_3258_502
Type: TC
Location: 582286 - 584679 (-)
Type: TC
Location: 582286 - 584679 (-)
Gene ID: C54_contig_3258_503
Type: pfam
Location: 584736 - 585158 (-)
Type: pfam
Location: 584736 - 585158 (-)
Gene ID: C54_contig_3258_504
Type: TC
Location: 585267 - 586871 (-)
Type: TC
Location: 585267 - 586871 (-)
Gene ID: C54_contig_3258_505
Type: STP
Location: 587334 - 589463 (+)
Type: STP
Location: 587334 - 589463 (+)
Gene ID: C54_contig_3258_506
Type: pfam
Location: 589483 - 589962 (-)
Type: pfam
Location: 589483 - 589962 (-)
Gene ID: C54_contig_3258_507
Type: CAZyme
Location: 590070 - 590987 (+)
Type: CAZyme
Location: 590070 - 590987 (+)
Gene ID: C54_contig_3258_508
Type: TC
Location: 591063 - 593618 (-)
Type: TC
Location: 591063 - 593618 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_502 | vegan > omnivore | 1.54172 | 0.01049 |
| C54_contig_3258_502 | vegetarian > omnivore | 1.83094 | 0.00141 |
| C54_contig_3258_503 | vegan > omnivore | 2.15680 | 0.01049 |
| C54_contig_3258_503 | vegetarian > omnivore | 2.16703 | 0.00141 |
| C54_contig_3258_504 | vegan > omnivore | 1.40494 | 0.01049 |
| C54_contig_3258_504 | vegetarian > omnivore | 1.24800 | 0.00141 |
| C54_contig_3258_505 | vegan > omnivore | 1.54989 | 0.01049 |
| C54_contig_3258_505 | vegetarian > omnivore | 1.16332 | 0.00141 |
| C54_contig_3258_508 | vegan > omnivore | 1.41671 | 0.01049 |
| C54_contig_3258_508 | vegetarian > omnivore | 1.13488 | 0.00141 |