Cluster: C54.bin_6_CGC31
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02298
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_3258 | C54_contig_3258_262 | 306959 | 308389 | - | GH28 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_263 | 308553 | 308930 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C54_contig_3258 | C54_contig_3258_264 | 309044 | 311071 | - | SusD_RagB | SusD-like_3 |
| TC | C54_contig_3258 | C54_contig_3258_265 | 311094 | 314426 | - | 1.B.14.6.2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_266 | 314464 | 315717 | - | CBM32 |
| TF | C54_contig_3258 | C54_contig_3258_267 | 315757 | 316272 | - | GerE |
| TF | C54_contig_3258 | C54_contig_3258_268 | 316631 | 319417 | - | HTH_AraC |
| CAZyme | C54_contig_3258 | C54_contig_3258_269 | 319724 | 322474 | - | PL40 |
Gene ID: C54_contig_3258_262
Type: CAZyme
Location: 306959 - 308389 (-)
Type: CAZyme
Location: 306959 - 308389 (-)
Gene ID: C54_contig_3258_263
Type:
Location: 308553 - 308930 (-)
Type:
Location: 308553 - 308930 (-)
Gene ID: C54_contig_3258_264
Type: pfam
Location: 309044 - 311071 (-)
Type: pfam
Location: 309044 - 311071 (-)
Gene ID: C54_contig_3258_265
Type: TC
Location: 311094 - 314426 (-)
Type: TC
Location: 311094 - 314426 (-)
Gene ID: C54_contig_3258_266
Type: CAZyme
Location: 314464 - 315717 (-)
Type: CAZyme
Location: 314464 - 315717 (-)
Gene ID: C54_contig_3258_267
Type: TF
Location: 315757 - 316272 (-)
Type: TF
Location: 315757 - 316272 (-)
Gene ID: C54_contig_3258_268
Type: TF
Location: 316631 - 319417 (-)
Type: TF
Location: 316631 - 319417 (-)
Gene ID: C54_contig_3258_269
Type: CAZyme
Location: 319724 - 322474 (-)
Type: CAZyme
Location: 319724 - 322474 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_268 | vegan > omnivore | 1.41780 | 0.01049 |
| C54_contig_3258_268 | vegetarian > omnivore | 1.51159 | 0.00141 |