Cluster: C54.bin_6_CGC30
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02733
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_246 | 280777 | 283104 | + | 2.A.21.9.2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_247 | 283123 | 284346 | - | GH88 |
| CAZyme | C54_contig_3258 | C54_contig_3258_248 | 284360 | 286009 | - | CBM91 | GH43_10 |
| CAZyme | C54_contig_3258 | C54_contig_3258_249 | 286155 | 288098 | - | GH97 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_250 | 288160 | 289803 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C54_contig_3258 | C54_contig_3258_251 | 289959 | 291401 | - | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | C54_contig_3258 | C54_contig_3258_252 | 291495 | 292880 | - | GH28 |
| CAZyme | C54_contig_3258 | C54_contig_3258_253 | 292973 | 296113 | - | GH2 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_254 | 296100 | 296195 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_3258 | C54_contig_3258_255 | 296185 | 297711 | - | CBM91 | GH43_9 |
Gene ID: C54_contig_3258_246
Type: TC
Location: 280777 - 283104 (+)
Type: TC
Location: 280777 - 283104 (+)
Gene ID: C54_contig_3258_247
Type: CAZyme
Location: 283123 - 284346 (-)
Type: CAZyme
Location: 283123 - 284346 (-)
Gene ID: C54_contig_3258_248
Type: CAZyme
Location: 284360 - 286009 (-)
Type: CAZyme
Location: 284360 - 286009 (-)
Gene ID: C54_contig_3258_249
Type: CAZyme
Location: 286155 - 288098 (-)
Type: CAZyme
Location: 286155 - 288098 (-)
Gene ID: C54_contig_3258_250
Type:
Location: 288160 - 289803 (-)
Type:
Location: 288160 - 289803 (-)
Gene ID: C54_contig_3258_251
Type: pfam
Location: 289959 - 291401 (-)
Type: pfam
Location: 289959 - 291401 (-)
Gene ID: C54_contig_3258_252
Type: CAZyme
Location: 291495 - 292880 (-)
Type: CAZyme
Location: 291495 - 292880 (-)
Gene ID: C54_contig_3258_253
Type: CAZyme
Location: 292973 - 296113 (-)
Type: CAZyme
Location: 292973 - 296113 (-)
Gene ID: C54_contig_3258_254
Type:
Location: 296100 - 296195 (-)
Type:
Location: 296100 - 296195 (-)
Gene ID: C54_contig_3258_255
Type: CAZyme
Location: 296185 - 297711 (-)
Type: CAZyme
Location: 296185 - 297711 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_246 | vegan > omnivore | 1.69401 | 0.01049 |
| C54_contig_3258_246 | vegetarian > omnivore | 1.85797 | 0.00141 |
| C54_contig_3258_251 | vegan > omnivore | 2.51002 | 0.01049 |
| C54_contig_3258_251 | vegetarian > omnivore | 2.49976 | 0.00141 |