Cluster: C54.bin_6_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00669
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_5485 | C54_contig_5485_52 | 86528 | 88276 | + | GH123 |
| TC | C54_contig_5485 | C54_contig_5485_53 | 88407 | 90908 | + | 3.A.12.1.1 |
| pfam | C54_contig_5485 | C54_contig_5485_54 | 90923 | 91567 | + | LolA_2 |
| STP | C54_contig_5485 | C54_contig_5485_55 | 91661 | 92611 | + | Pyr_redox_2 |
| CAZyme | C54_contig_5485 | C54_contig_5485_56 | 92708 | 95236 | - | GH20 |
Gene ID: C54_contig_5485_52
Type: CAZyme
Location: 86528 - 88276 (+)
Type: CAZyme
Location: 86528 - 88276 (+)
Gene ID: C54_contig_5485_53
Type: TC
Location: 88407 - 90908 (+)
Type: TC
Location: 88407 - 90908 (+)
Gene ID: C54_contig_5485_54
Type: pfam
Location: 90923 - 91567 (+)
Type: pfam
Location: 90923 - 91567 (+)
Gene ID: C54_contig_5485_55
Type: STP
Location: 91661 - 92611 (+)
Type: STP
Location: 91661 - 92611 (+)
Gene ID: C54_contig_5485_56
Type: CAZyme
Location: 92708 - 95236 (-)
Type: CAZyme
Location: 92708 - 95236 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_5485_54 | vegan > omnivore | 1.25618 | 0.01049 |
| C54_contig_5485_54 | vegetarian > omnivore | 2.53850 | 0.00141 |
| C54_contig_5485_54 | vegetarian > vegan | 1.28232 | 0.00827 |