Cluster: C54.bin_6_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_08004
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_100 | 100067 | 100393 | - | 2.A.7.1.4 |
| STP | C54_contig_3258 | C54_contig_3258_101 | 100465 | 101028 | - | cNMP_binding |
| STP | C54_contig_3258 | C54_contig_3258_102 | 101141 | 101716 | - | cNMP_binding |
| TC | C54_contig_3258 | C54_contig_3258_103 | 101655 | 103088 | - | 2.A.66.1.7 |
| TC | C54_contig_3258 | C54_contig_3258_104 | 103326 | 105245 | + | 1.A.33.1.2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_105 | 105541 | 109395 | + | GH31_18 |
Gene ID: C54_contig_3258_100
Type: TC
Location: 100067 - 100393 (-)
Type: TC
Location: 100067 - 100393 (-)
Gene ID: C54_contig_3258_101
Type: STP
Location: 100465 - 101028 (-)
Type: STP
Location: 100465 - 101028 (-)
Gene ID: C54_contig_3258_102
Type: STP
Location: 101141 - 101716 (-)
Type: STP
Location: 101141 - 101716 (-)
Gene ID: C54_contig_3258_103
Type: TC
Location: 101655 - 103088 (-)
Type: TC
Location: 101655 - 103088 (-)
Gene ID: C54_contig_3258_104
Type: TC
Location: 103326 - 105245 (+)
Type: TC
Location: 103326 - 105245 (+)
Gene ID: C54_contig_3258_105
Type: CAZyme
Location: 105541 - 109395 (+)
Type: CAZyme
Location: 105541 - 109395 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_102 | vegan > omnivore | 2.93230 | 0.01049 |
| C54_contig_3258_102 | vegetarian > omnivore | 2.28559 | 0.00141 |