Cluster: C54.bin_6_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01238
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_6131 | C54_contig_6131_2 | 1120 | 3936 | - | 1.B.14.12.2 |
| CAZyme | C54_contig_6131 | C54_contig_6131_3 | 4124 | 5701 | - | CBM91 | GH43_10 |
| CAZyme | C54_contig_6131 | C54_contig_6131_4 | 5720 | 7108 | - | CBM32 | GH43_34 |
| pfam | C54_contig_6131 | C54_contig_6131_5 | 7259 | 7642 | - | rhaM |
| TC | C54_contig_6131 | C54_contig_6131_6 | 7748 | 9436 | - | 8.A.46.1.5 |
| TC | C54_contig_6131 | C54_contig_6131_7 | 9461 | 12538 | - | 1.B.14.6.1 |
| CAZyme | C54_contig_6131 | C54_contig_6131_8 | 12630 | 14270 | - | GH29 |
| TF | C54_contig_6131 | C54_contig_6131_9 | 14490 | 15347 | + | HTH_AraC | HTH_AraC |
| TF | C54_contig_6131 | C54_contig_6131_10 | 15344 | 19417 | - | HTH_AraC |
| TC | C54_contig_6131 | C54_contig_6131_11 | 19795 | 22857 | + | 1.B.14.6.1 |
| pfam | C54_contig_6131 | C54_contig_6131_12 | 22878 | 24887 | + | SusD_RagB | SusD-like_3 |
| CAZyme | C54_contig_6131 | C54_contig_6131_13 | 24970 | 27321 | - | GH2 |
Gene ID: C54_contig_6131_2
Type: TC
Location: 1120 - 3936 (-)
Type: TC
Location: 1120 - 3936 (-)
Gene ID: C54_contig_6131_3
Type: CAZyme
Location: 4124 - 5701 (-)
Type: CAZyme
Location: 4124 - 5701 (-)
Gene ID: C54_contig_6131_4
Type: CAZyme
Location: 5720 - 7108 (-)
Type: CAZyme
Location: 5720 - 7108 (-)
Gene ID: C54_contig_6131_5
Type: pfam
Location: 7259 - 7642 (-)
Type: pfam
Location: 7259 - 7642 (-)
Gene ID: C54_contig_6131_6
Type: TC
Location: 7748 - 9436 (-)
Type: TC
Location: 7748 - 9436 (-)
Gene ID: C54_contig_6131_7
Type: TC
Location: 9461 - 12538 (-)
Type: TC
Location: 9461 - 12538 (-)
Gene ID: C54_contig_6131_8
Type: CAZyme
Location: 12630 - 14270 (-)
Type: CAZyme
Location: 12630 - 14270 (-)
Gene ID: C54_contig_6131_9
Type: TF
Location: 14490 - 15347 (+)
Type: TF
Location: 14490 - 15347 (+)
Gene ID: C54_contig_6131_10
Type: TF
Location: 15344 - 19417 (-)
Type: TF
Location: 15344 - 19417 (-)
Gene ID: C54_contig_6131_11
Type: TC
Location: 19795 - 22857 (+)
Type: TC
Location: 19795 - 22857 (+)
Gene ID: C54_contig_6131_12
Type: pfam
Location: 22878 - 24887 (+)
Type: pfam
Location: 22878 - 24887 (+)
Gene ID: C54_contig_6131_13
Type: CAZyme
Location: 24970 - 27321 (-)
Type: CAZyme
Location: 24970 - 27321 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_6131_8 | vegan > omnivore | 1.36158 | 0.01049 |
| C54_contig_6131_8 | vegetarian > omnivore | 1.62037 | 0.00141 |