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Cluster: C54.bin_6_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C54_contig_1855 C54_contig_1855_696 915480 916844 - 2.A.6.2.20
TC C54_contig_1855 C54_contig_1855_697 916841 920044 - 2.A.6.2.22
TC C54_contig_1855 C54_contig_1855_698 920048 921205 - 2.A.6.2.47
TF C54_contig_1855 C54_contig_1855_699 921378 922214 + HTH_AraC
CAZyme C54_contig_1855 C54_contig_1855_700 922712 925042 + GH20
TC C54_contig_1855 C54_contig_1855_701 925071 926552 - 2.A.50.2.1
Gene ID: C54_contig_1855_696
Type: TC
Location: 915480 - 916844 (-)
Gene ID: C54_contig_1855_697
Type: TC
Location: 916841 - 920044 (-)
Gene ID: C54_contig_1855_698
Type: TC
Location: 920048 - 921205 (-)
Gene ID: C54_contig_1855_699
Type: TF
Location: 921378 - 922214 (+)
Gene ID: C54_contig_1855_700
Type: CAZyme
Location: 922712 - 925042 (+)
Gene ID: C54_contig_1855_701
Type: TC
Location: 925071 - 926552 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C54_contig_1855_696 vegan > omnivore 1.14744 0.01049
C54_contig_1855_696 vegetarian > omnivore 1.29173 0.00141
C54_contig_1855_698 vegetarian > omnivore 1.22154 0.00141
C54_contig_1855_699 vegan > omnivore 1.18929 0.01049
C54_contig_1855_699 vegetarian > omnivore 1.78367 0.00141

🧭 Explore Read Mapping of CGC

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