Cluster: C54.bin_6_CGC22
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 12
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_02732
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_1855 | C54_contig_1855_563 | 709674 | 710744 | - | 9.B.97.1.10 |
| CAZyme | C54_contig_1855 | C54_contig_1855_564 | 710770 | 713130 | - | GH3 |
| CAZyme | C54_contig_1855 | C54_contig_1855_565 | 713140 | 715401 | - | GH92 |
| CAZyme | C54_contig_1855 | C54_contig_1855_566 | 715462 | 719124 | - | PL17 |
| CAZyme | C54_contig_1855 | C54_contig_1855_567 | 719478 | 720776 | - | PL42 |
| CAZyme | C54_contig_1855 | C54_contig_1855_568 | 720808 | 722205 | - | CE20 |
| sulfatase | C54_contig_1855 | C54_contig_1855_569 | 722209 | 723501 | - | S1_15 |
| CAZyme | C54_contig_1855 | C54_contig_1855_570 | 723661 | 726570 | - | GH2 |
| pfam | C54_contig_1855 | C54_contig_1855_571 | 726844 | 729681 | - | Pect-lyase_RHGA_epim |
| CAZyme | C54_contig_1855 | C54_contig_1855_572 | 729710 | 733111 | - | GH2 |
| CAZyme | C54_contig_1855 | C54_contig_1855_573 | 733143 | 735737 | - | GH3 |
| CAZyme | C54_contig_1855 | C54_contig_1855_574 | 735788 | 739477 | - | GH2 |
| pfam | C54_contig_1855 | C54_contig_1855_575 | 739900 | 740637 | - | DUF3823 | DUF3823_C |
| pfam | C54_contig_1855 | C54_contig_1855_576 | 740657 | 742702 | - | SusD_RagB | SusD-like_3 |
| TC | C54_contig_1855 | C54_contig_1855_577 | 742721 | 745918 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | C54_contig_1855 | C54_contig_1855_578 | 745958 | 746134 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | C54_contig_1855 | C54_contig_1855_579 | 746770 | 748707 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_1855 | C54_contig_1855_580 | 748704 | 751511 | - | GH31_4 |
| pfam | C54_contig_1855 | C54_contig_1855_581 | 751524 | 753434 | - | Trehalase | Glyco_hydro_63 | MGH1-like_GH |
| NULL(UNKNOWN) | C54_contig_1855 | C54_contig_1855_582 | 753612 | 756131 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_1855 | C54_contig_1855_583 | 756336 | 757811 | + | CE20 |
| pfam | C54_contig_1855 | C54_contig_1855_584 | 757832 | 759895 | + | NosD | Alginate_lyase | Beta_helix |
| CAZyme | C54_contig_1855 | C54_contig_1855_585 | 760013 | 763240 | - | GH2 |
Gene ID: C54_contig_1855_563
Type: TC
Location: 709674 - 710744 (-)
Type: TC
Location: 709674 - 710744 (-)
Gene ID: C54_contig_1855_564
Type: CAZyme
Location: 710770 - 713130 (-)
Type: CAZyme
Location: 710770 - 713130 (-)
Gene ID: C54_contig_1855_565
Type: CAZyme
Location: 713140 - 715401 (-)
Type: CAZyme
Location: 713140 - 715401 (-)
Gene ID: C54_contig_1855_566
Type: CAZyme
Location: 715462 - 719124 (-)
Type: CAZyme
Location: 715462 - 719124 (-)
Gene ID: C54_contig_1855_567
Type: CAZyme
Location: 719478 - 720776 (-)
Type: CAZyme
Location: 719478 - 720776 (-)
Gene ID: C54_contig_1855_568
Type: CAZyme
Location: 720808 - 722205 (-)
Type: CAZyme
Location: 720808 - 722205 (-)
Gene ID: C54_contig_1855_569
Type: sulfatase
Location: 722209 - 723501 (-)
Type: sulfatase
Location: 722209 - 723501 (-)
Gene ID: C54_contig_1855_570
Type: CAZyme
Location: 723661 - 726570 (-)
Type: CAZyme
Location: 723661 - 726570 (-)
Gene ID: C54_contig_1855_571
Type: pfam
Location: 726844 - 729681 (-)
Type: pfam
Location: 726844 - 729681 (-)
Gene ID: C54_contig_1855_572
Type: CAZyme
Location: 729710 - 733111 (-)
Type: CAZyme
Location: 729710 - 733111 (-)
Gene ID: C54_contig_1855_573
Type: CAZyme
Location: 733143 - 735737 (-)
Type: CAZyme
Location: 733143 - 735737 (-)
Gene ID: C54_contig_1855_574
Type: CAZyme
Location: 735788 - 739477 (-)
Type: CAZyme
Location: 735788 - 739477 (-)
Gene ID: C54_contig_1855_575
Type: pfam
Location: 739900 - 740637 (-)
Type: pfam
Location: 739900 - 740637 (-)
Gene ID: C54_contig_1855_576
Type: pfam
Location: 740657 - 742702 (-)
Type: pfam
Location: 740657 - 742702 (-)
Gene ID: C54_contig_1855_577
Type: TC
Location: 742721 - 745918 (-)
Type: TC
Location: 742721 - 745918 (-)
Gene ID: C54_contig_1855_578
Type:
Location: 745958 - 746134 (+)
Type:
Location: 745958 - 746134 (+)
Gene ID: C54_contig_1855_579
Type:
Location: 746770 - 748707 (-)
Type:
Location: 746770 - 748707 (-)
Gene ID: C54_contig_1855_580
Type: CAZyme
Location: 748704 - 751511 (-)
Type: CAZyme
Location: 748704 - 751511 (-)
Gene ID: C54_contig_1855_581
Type: pfam
Location: 751524 - 753434 (-)
Type: pfam
Location: 751524 - 753434 (-)
Gene ID: C54_contig_1855_582
Type:
Location: 753612 - 756131 (-)
Type:
Location: 753612 - 756131 (-)
Gene ID: C54_contig_1855_583
Type: CAZyme
Location: 756336 - 757811 (+)
Type: CAZyme
Location: 756336 - 757811 (+)
Gene ID: C54_contig_1855_584
Type: pfam
Location: 757832 - 759895 (+)
Type: pfam
Location: 757832 - 759895 (+)
Gene ID: C54_contig_1855_585
Type: CAZyme
Location: 760013 - 763240 (-)
Type: CAZyme
Location: 760013 - 763240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_1855_564 | vegan > omnivore | 1.02080 | 0.01049 |