Cluster: C54.bin_6_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_1855 | C54_contig_1855_430 | 528522 | 530117 | + | 2.A.81.1.2 |
| STP | C54_contig_1855 | C54_contig_1855_431 | 530630 | 531871 | + | Nitroreductase | Nitroreductase |
| pfam | C54_contig_1855 | C54_contig_1855_432 | 531882 | 532271 | - | DUF2721 |
| CAZyme | C54_contig_1855 | C54_contig_1855_433 | 532300 | 533280 | - | GH43_34 |
| pfam | C54_contig_1855 | C54_contig_1855_434 | 533490 | 533927 | - | Cupin_1 | Cupin_3 | Cupin_2 |
| NULL(UNKNOWN) | C54_contig_1855 | C54_contig_1855_435 | 534155 | 534553 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_contig_1855 | C54_contig_1855_436 | 534520 | 535725 | - | 2.A.1.2.97 |
| STP | C54_contig_1855 | C54_contig_1855_437 | 536226 | 537476 | + | EPSP_synthase |
| NULL(UNKNOWN) | C54_contig_1855 | C54_contig_1855_438 | 537480 | 537896 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_contig_1855 | C54_contig_1855_439 | 537898 | 538725 | + | 3.A.1.15.13 |
| TC | C54_contig_1855 | C54_contig_1855_440 | 538741 | 541776 | + | 9.A.25.1.1 |
Gene ID: C54_contig_1855_430
Type: TC
Location: 528522 - 530117 (+)
Type: TC
Location: 528522 - 530117 (+)
Gene ID: C54_contig_1855_431
Type: STP
Location: 530630 - 531871 (+)
Type: STP
Location: 530630 - 531871 (+)
Gene ID: C54_contig_1855_432
Type: pfam
Location: 531882 - 532271 (-)
Type: pfam
Location: 531882 - 532271 (-)
Gene ID: C54_contig_1855_433
Type: CAZyme
Location: 532300 - 533280 (-)
Type: CAZyme
Location: 532300 - 533280 (-)
Gene ID: C54_contig_1855_434
Type: pfam
Location: 533490 - 533927 (-)
Type: pfam
Location: 533490 - 533927 (-)
Gene ID: C54_contig_1855_435
Type:
Location: 534155 - 534553 (+)
Type:
Location: 534155 - 534553 (+)
Gene ID: C54_contig_1855_436
Type: TC
Location: 534520 - 535725 (-)
Type: TC
Location: 534520 - 535725 (-)
Gene ID: C54_contig_1855_437
Type: STP
Location: 536226 - 537476 (+)
Type: STP
Location: 536226 - 537476 (+)
Gene ID: C54_contig_1855_438
Type:
Location: 537480 - 537896 (+)
Type:
Location: 537480 - 537896 (+)
Gene ID: C54_contig_1855_439
Type: TC
Location: 537898 - 538725 (+)
Type: TC
Location: 537898 - 538725 (+)
Gene ID: C54_contig_1855_440
Type: TC
Location: 538741 - 541776 (+)
Type: TC
Location: 538741 - 541776 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_1855_431 | vegan > omnivore | 2.51321 | 0.01049 |
| C54_contig_1855_431 | vegetarian > omnivore | 2.77741 | 0.00141 |
| C54_contig_1855_434 | vegan > omnivore | 1.08020 | 0.01049 |
| C54_contig_1855_434 | vegetarian > omnivore | 1.45497 | 0.00141 |
| C54_contig_1855_435 | vegan > omnivore | 2.67045 | 0.01049 |
| C54_contig_1855_435 | vegetarian > omnivore | 3.10944 | 0.00141 |
| C54_contig_1855_437 | vegan > omnivore | 1.04595 | 0.01049 |
| C54_contig_1855_437 | vegetarian > omnivore | 1.21640 | 0.00141 |
| C54_contig_1855_440 | vegan > omnivore | 1.95017 | 0.01049 |
| C54_contig_1855_440 | vegetarian > omnivore | 2.95915 | 0.00141 |
| C54_contig_1855_440 | vegetarian > vegan | 1.00898 | 0.00827 |