Cluster: C54.bin_6_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C54.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_1855 | C54_contig_1855_362 | 456839 | 458938 | + | 3.A.16.1.1 |
| pfam | C54_contig_1855 | C54_contig_1855_363 | 458961 | 459800 | + | CTP_transf_1 |
| pfam | C54_contig_1855 | C54_contig_1855_364 | 459857 | 460606 | - | NigD_N | NigD_C |
| CAZyme | C54_contig_1855 | C54_contig_1855_365 | 460762 | 461898 | - | GT19 |
Gene ID: C54_contig_1855_362
Type: TC
Location: 456839 - 458938 (+)
Type: TC
Location: 456839 - 458938 (+)
Gene ID: C54_contig_1855_363
Type: pfam
Location: 458961 - 459800 (+)
Type: pfam
Location: 458961 - 459800 (+)
Gene ID: C54_contig_1855_364
Type: pfam
Location: 459857 - 460606 (-)
Type: pfam
Location: 459857 - 460606 (-)
Gene ID: C54_contig_1855_365
Type: CAZyme
Location: 460762 - 461898 (-)
Type: CAZyme
Location: 460762 - 461898 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_1855_364 | vegan > omnivore | 1.67911 | 0.01049 |
| C54_contig_1855_364 | vegetarian > omnivore | 2.75345 | 0.00141 |
| C54_contig_1855_364 | vegetarian > vegan | 1.07434 | 0.00827 |