dbCAN HGM

Cluster: C54.bin_6_CGC17

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 25
CAZyme Count: 11
Substrate:
Genome ID: C54.bin_6
CGC Family ID: CGCFAM_02731
Continent: Asia
Source Study: Jin et al., 2023 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	C54_contig_1855	C54_contig_1855_283	330757	332361	+	GH28
CAZyme	C54_contig_1855	C54_contig_1855_284	332382	336251	+	CBM67 \| GH33 \| GH78
pfam	C54_contig_1855	C54_contig_1855_285	336346	337566	+	DUF4861
CAZyme	C54_contig_1855	C54_contig_1855_286	337603	339282	+	CBM91 \| GH43_10
pfam	C54_contig_1855	C54_contig_1855_287	339681	340334	+	Hydrolase \| HAD \| Hydrolase_like \| HAD_2
CAZyme	C54_contig_1855	C54_contig_1855_288	340591	343074	+	GH95
TC	C54_contig_1855	C54_contig_1855_289	343355	346672	+	1.B.14.6.1
TC	C54_contig_1855	C54_contig_1855_290	346692	348752	+	8.A.46.1.3
NULL(UNKNOWN)	C54_contig_1855	C54_contig_1855_291	348766	350496	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	C54_contig_1855	C54_contig_1855_292	350592	352004	+	GH140
TF	C54_contig_1855	C54_contig_1855_293	352018	356472	-	HTH_AraC
CAZyme	C54_contig_1855	C54_contig_1855_294	356555	357709	+	CE19
TF	C54_contig_1855	C54_contig_1855_295	357785	362143	+	HTH_AraC \| HTH_AraC
CAZyme	C54_contig_1855	C54_contig_1855_296	362235	363386	-	CE19
pfam	C54_contig_1855	C54_contig_1855_297	363403	364935	-	SusD_RagB \| SusD-like_3
TC	C54_contig_1855	C54_contig_1855_298	364957	367950	-	1.B.14.6.1
NULL(UNKNOWN)	C54_contig_1855	C54_contig_1855_299	368003	368191	-	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	C54_contig_1855	C54_contig_1855_300	368353	369666	-	CE7
CAZyme	C54_contig_1855	C54_contig_1855_301	369818	371584	-	CE12 \| CE8
STP	C54_contig_1855	C54_contig_1855_302	371733	372080	+	AraC_binding
CAZyme	C54_contig_1855	C54_contig_1855_303	372172	373140	-	CE8
CAZyme	C54_contig_1855	C54_contig_1855_304	373145	374365	-	GH105
TC	C54_contig_1855	C54_contig_1855_305	374667	376184	+	2.A.1.14.25
pfam	C54_contig_1855	C54_contig_1855_306	376576	379968	-	AAA_11 \| AAA_11 \| AAA_12 \| AAA_19 \| AAA_30
TC	C54_contig_1855	C54_contig_1855_307	379968	380789	-	2.A.64.3.2

Gene ID: C54_contig_1855_283
Type: CAZyme
Location: 330757 - 332361 (+)

Gene ID: C54_contig_1855_284
Type: CAZyme
Location: 332382 - 336251 (+)

Gene ID: C54_contig_1855_285
Type: pfam
Location: 336346 - 337566 (+)

Gene ID: C54_contig_1855_286
Type: CAZyme
Location: 337603 - 339282 (+)

Gene ID: C54_contig_1855_287
Type: pfam
Location: 339681 - 340334 (+)

Gene ID: C54_contig_1855_288
Type: CAZyme
Location: 340591 - 343074 (+)

Gene ID: C54_contig_1855_289
Type: TC
Location: 343355 - 346672 (+)

Gene ID: C54_contig_1855_290
Type: TC
Location: 346692 - 348752 (+)

Gene ID: C54_contig_1855_291
Type:
Location: 348766 - 350496 (+)

Gene ID: C54_contig_1855_292
Type: CAZyme
Location: 350592 - 352004 (+)

Gene ID: C54_contig_1855_293
Type: TF
Location: 352018 - 356472 (-)

Gene ID: C54_contig_1855_294
Type: CAZyme
Location: 356555 - 357709 (+)

Gene ID: C54_contig_1855_295
Type: TF
Location: 357785 - 362143 (+)

Gene ID: C54_contig_1855_296
Type: CAZyme
Location: 362235 - 363386 (-)

Gene ID: C54_contig_1855_297
Type: pfam
Location: 363403 - 364935 (-)

Gene ID: C54_contig_1855_298
Type: TC
Location: 364957 - 367950 (-)

Gene ID: C54_contig_1855_299
Type:
Location: 368003 - 368191 (-)

Gene ID: C54_contig_1855_300
Type: CAZyme
Location: 368353 - 369666 (-)

Gene ID: C54_contig_1855_301
Type: CAZyme
Location: 369818 - 371584 (-)

Gene ID: C54_contig_1855_302
Type: STP
Location: 371733 - 372080 (+)

Gene ID: C54_contig_1855_303
Type: CAZyme
Location: 372172 - 373140 (-)

Gene ID: C54_contig_1855_304
Type: CAZyme
Location: 373145 - 374365 (-)

Gene ID: C54_contig_1855_305
Type: TC
Location: 374667 - 376184 (+)

Gene ID: C54_contig_1855_306
Type: pfam
Location: 376576 - 379968 (-)

Gene ID: C54_contig_1855_307
Type: TC
Location: 379968 - 380789 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacteroidota

→

Class

Bacteroidia

→

Order

Bacteroidales

→

Family

Bacteroidaceae

→

Genus

Bacteroides

→

Species

Bacteroides intestinalis_A

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
C54_contig_1855_285	vegan > omnivore	2.05141	0.01049
C54_contig_1855_285	vegetarian > omnivore	2.90190	0.00141
C54_contig_1855_288	vegetarian > omnivore	1.05119	0.00141
C54_contig_1855_296	vegetarian > omnivore	1.23841	0.00141
C54_contig_1855_296	vegetarian > vegan	1.09110	0.00827
C54_contig_1855_301	vegan > omnivore	1.74897	0.01049
C54_contig_1855_301	vegetarian > omnivore	1.88889	0.00141
C54_contig_1855_302	vegan > omnivore	1.55866	0.01049

Gene ID	Condition Pair	log2FC	FDR P-value
C54_contig_1855_285	vegan > omnivore	1.23380	0.00290
C54_contig_1855_294	vegan > omnivore	2.24391	0.00290
C54_contig_1855_302	vegan > flexitarian	1.14746	0.01170

🧭 Explore Read Mapping of CGC

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