Cluster: C54.bin_6_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: C54.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_1855 | C54_contig_1855_101 | 116133 | 117971 | + | PL11 |
| CAZyme | C54_contig_1855 | C54_contig_1855_102 | 118072 | 121077 | + | GH2 |
| CAZyme | C54_contig_1855 | C54_contig_1855_103 | 121110 | 122936 | + | PL11_1 |
| CAZyme | C54_contig_1855 | C54_contig_1855_104 | 122942 | 126298 | + | PL26 |
| CAZyme | C54_contig_1855 | C54_contig_1855_105 | 126392 | 129595 | + | GH28 | PL11_1 |
| CAZyme | C54_contig_1855 | C54_contig_1855_106 | 129623 | 131029 | + | GH105 |
| pfam | C54_contig_1855 | C54_contig_1855_107 | 131050 | 131364 | + | rhaM |
| TF | C54_contig_1855 | C54_contig_1855_108 | 131456 | 135757 | + | HTH_AraC |
| CAZyme | C54_contig_1855 | C54_contig_1855_109 | 135871 | 137820 | - | GH127 |
| pfam | C54_contig_1855 | C54_contig_1855_110 | 137817 | 138824 | - | URO-D |
| TC | C54_contig_1855 | C54_contig_1855_111 | 138855 | 140177 | - | 2.A.1.7.2 |
| CAZyme | C54_contig_1855 | C54_contig_1855_112 | 140217 | 142538 | - | GH3 |
Gene ID: C54_contig_1855_101
Type: CAZyme
Location: 116133 - 117971 (+)
Type: CAZyme
Location: 116133 - 117971 (+)
Gene ID: C54_contig_1855_102
Type: CAZyme
Location: 118072 - 121077 (+)
Type: CAZyme
Location: 118072 - 121077 (+)
Gene ID: C54_contig_1855_103
Type: CAZyme
Location: 121110 - 122936 (+)
Type: CAZyme
Location: 121110 - 122936 (+)
Gene ID: C54_contig_1855_104
Type: CAZyme
Location: 122942 - 126298 (+)
Type: CAZyme
Location: 122942 - 126298 (+)
Gene ID: C54_contig_1855_105
Type: CAZyme
Location: 126392 - 129595 (+)
Type: CAZyme
Location: 126392 - 129595 (+)
Gene ID: C54_contig_1855_106
Type: CAZyme
Location: 129623 - 131029 (+)
Type: CAZyme
Location: 129623 - 131029 (+)
Gene ID: C54_contig_1855_107
Type: pfam
Location: 131050 - 131364 (+)
Type: pfam
Location: 131050 - 131364 (+)
Gene ID: C54_contig_1855_108
Type: TF
Location: 131456 - 135757 (+)
Type: TF
Location: 131456 - 135757 (+)
Gene ID: C54_contig_1855_109
Type: CAZyme
Location: 135871 - 137820 (-)
Type: CAZyme
Location: 135871 - 137820 (-)
Gene ID: C54_contig_1855_110
Type: pfam
Location: 137817 - 138824 (-)
Type: pfam
Location: 137817 - 138824 (-)
Gene ID: C54_contig_1855_111
Type: TC
Location: 138855 - 140177 (-)
Type: TC
Location: 138855 - 140177 (-)
Gene ID: C54_contig_1855_112
Type: CAZyme
Location: 140217 - 142538 (-)
Type: CAZyme
Location: 140217 - 142538 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_1855_104 | vegetarian > vegan | 1.11747 | 0.00827 |