Cluster: C54.bin_6_CGC11
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate: host glycan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_1855 | C54_contig_1855_50 | 46346 | 48598 | - | GH92 |
| CAZyme | C54_contig_1855 | C54_contig_1855_51 | 48625 | 49596 | - | GH130_2 |
| pfam | C54_contig_1855 | C54_contig_1855_52 | 49624 | 50934 | - | MFS_1 |
| CAZyme | C54_contig_1855 | C54_contig_1855_53 | 50959 | 53226 | - | GH92 |
| CAZyme | C54_contig_1855 | C54_contig_1855_54 | 53254 | 55260 | - | GH97 |
| CAZyme | C54_contig_1855 | C54_contig_1855_55 | 55411 | 57384 | - | GH18 |
| pfam | C54_contig_1855 | C54_contig_1855_56 | 57415 | 58569 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | C54_contig_1855 | C54_contig_1855_57 | 58578 | 59594 | - | GH18_BT1044-like |
| TC | C54_contig_1855 | C54_contig_1855_58 | 59609 | 61186 | - | 8.A.46.2.2 |
| TC | C54_contig_1855 | C54_contig_1855_59 | 61208 | 64552 | - | 1.B.14.6.13 |
| CAZyme | C54_contig_1855 | C54_contig_1855_60 | 64743 | 67022 | - | GH92 |
| STP | C54_contig_1855 | C54_contig_1855_61 | 67064 | 68068 | - | FecR |
| TF | C54_contig_1855 | C54_contig_1855_62 | 68103 | 68663 | - | GerE |
| CAZyme | C54_contig_1855 | C54_contig_1855_63 | 68684 | 70918 | - | GH92 |
Gene ID: C54_contig_1855_50
Type: CAZyme
Location: 46346 - 48598 (-)
Type: CAZyme
Location: 46346 - 48598 (-)
Gene ID: C54_contig_1855_51
Type: CAZyme
Location: 48625 - 49596 (-)
Type: CAZyme
Location: 48625 - 49596 (-)
Gene ID: C54_contig_1855_52
Type: pfam
Location: 49624 - 50934 (-)
Type: pfam
Location: 49624 - 50934 (-)
Gene ID: C54_contig_1855_53
Type: CAZyme
Location: 50959 - 53226 (-)
Type: CAZyme
Location: 50959 - 53226 (-)
Gene ID: C54_contig_1855_54
Type: CAZyme
Location: 53254 - 55260 (-)
Type: CAZyme
Location: 53254 - 55260 (-)
Gene ID: C54_contig_1855_55
Type: CAZyme
Location: 55411 - 57384 (-)
Type: CAZyme
Location: 55411 - 57384 (-)
Gene ID: C54_contig_1855_56
Type: pfam
Location: 57415 - 58569 (-)
Type: pfam
Location: 57415 - 58569 (-)
Gene ID: C54_contig_1855_57
Type: pfam
Location: 58578 - 59594 (-)
Type: pfam
Location: 58578 - 59594 (-)
Gene ID: C54_contig_1855_58
Type: TC
Location: 59609 - 61186 (-)
Type: TC
Location: 59609 - 61186 (-)
Gene ID: C54_contig_1855_59
Type: TC
Location: 61208 - 64552 (-)
Type: TC
Location: 61208 - 64552 (-)
Gene ID: C54_contig_1855_60
Type: CAZyme
Location: 64743 - 67022 (-)
Type: CAZyme
Location: 64743 - 67022 (-)
Gene ID: C54_contig_1855_61
Type: STP
Location: 67064 - 68068 (-)
Type: STP
Location: 67064 - 68068 (-)
Gene ID: C54_contig_1855_62
Type: TF
Location: 68103 - 68663 (-)
Type: TF
Location: 68103 - 68663 (-)
Gene ID: C54_contig_1855_63
Type: CAZyme
Location: 68684 - 70918 (-)
Type: CAZyme
Location: 68684 - 70918 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_1855_62 | vegan > omnivore | 1.62811 | 0.01049 |